View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4813-Insertion-5 (Length: 700)

Name: NF4813-Insertion-5
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4813-Insertion-5
NF4813-Insertion-5
[»] chr7 (15 HSPs)
chr7 (30-364)||(18796365-18796683)
chr7 (402-475)||(46273473-46273546)
chr7 (453-540)||(39294906-39294993)
chr7 (456-538)||(13798500-13798582)
chr7 (462-540)||(20188237-20188315)
chr7 (426-476)||(44226518-44226568)
chr7 (430-526)||(31877374-31877470)
chr7 (430-477)||(432933-432980)
chr7 (381-492)||(12629767-12629878)
chr7 (452-538)||(30859755-30859841)
chr7 (432-475)||(36653278-36653321)
chr7 (425-475)||(23943723-23943773)
chr7 (425-514)||(23245935-23246024)
chr7 (381-478)||(38458300-38458397)
chr7 (382-474)||(24504112-24504204)
[»] scaffold0001 (2 HSPs)
scaffold0001 (108-311)||(188095-188298)
scaffold0001 (321-475)||(185441-185596)
[»] chr3 (16 HSPs)
chr3 (110-281)||(44643904-44644074)
chr3 (381-538)||(20513451-20513608)
chr3 (452-538)||(52562611-52562697)
chr3 (381-477)||(30842067-30842163)
chr3 (381-475)||(6778615-6778709)
chr3 (464-535)||(16281018-16281089)
chr3 (410-477)||(46183001-46183068)
chr3 (331-394)||(51171083-51171146)
chr3 (383-465)||(29522953-29523035)
chr3 (437-475)||(54336763-54336801)
chr3 (402-475)||(53630277-53630350)
chr3 (453-540)||(49304075-49304162)
chr3 (452-535)||(52562778-52562861)
chr3 (401-475)||(7789916-7789990)
chr3 (452-492)||(4041096-4041136)
chr3 (425-477)||(46637054-46637106)
[»] chr6 (10 HSPs)
chr6 (383-540)||(9929530-9929687)
chr6 (412-540)||(4410219-4410345)
chr6 (381-477)||(7527018-7527114)
chr6 (453-540)||(11599968-11600055)
chr6 (426-476)||(35018737-35018787)
chr6 (436-477)||(1031790-1031831)
chr6 (416-472)||(32879621-32879677)
chr6 (331-394)||(32879731-32879794)
chr6 (452-540)||(5741179-5741267)
chr6 (452-540)||(5741513-5741601)
[»] chr4 (26 HSPs)
chr4 (381-475)||(21283799-21283893)
chr4 (381-514)||(42704366-42704499)
chr4 (453-540)||(52031633-52031719)
chr4 (381-477)||(32304904-32305000)
chr4 (425-540)||(16935471-16935585)
chr4 (452-540)||(32303802-32303890)
chr4 (431-535)||(42040398-42040501)
chr4 (426-477)||(22923316-22923367)
chr4 (426-477)||(22927969-22928020)
chr4 (426-477)||(22984248-22984299)
chr4 (426-477)||(22997836-22997887)
chr4 (483-540)||(18846213-18846270)
chr4 (429-477)||(12657194-12657242)
chr4 (326-394)||(32304723-32304791)
chr4 (425-477)||(45864948-45865000)
chr4 (425-477)||(54185604-54185656)
chr4 (453-540)||(33983757-33983844)
chr4 (425-475)||(156103-156153)
chr4 (401-475)||(11661016-11661090)
chr4 (430-475)||(11660824-11660869)
chr4 (483-540)||(18845341-18845398)
chr4 (381-477)||(1939318-1939414)
chr4 (384-475)||(39466255-39466346)
chr4 (453-540)||(43501717-43501804)
chr4 (453-540)||(45042103-45042190)
chr4 (499-540)||(20779963-20780004)
[»] chr2 (15 HSPs)
chr2 (381-540)||(31116161-31116320)
chr2 (382-538)||(187212-187368)
chr2 (400-511)||(6401727-6401838)
chr2 (453-540)||(37058118-37058205)
chr2 (379-477)||(19380170-19380268)
chr2 (499-547)||(4616019-4616067)
chr2 (453-533)||(5289776-5289856)
chr2 (453-540)||(6729666-6729752)
chr2 (452-538)||(33710800-33710886)
chr2 (466-540)||(41191334-41191408)
chr2 (425-477)||(5848087-5848139)
chr2 (484-536)||(14414139-14414191)
chr2 (453-535)||(35150502-35150584)
chr2 (381-473)||(28036526-28036618)
chr2 (346-394)||(34233508-34233556)
[»] scaffold0408 (1 HSPs)
scaffold0408 (384-498)||(7842-7956)
[»] chr8 (17 HSPs)
chr8 (384-498)||(14097499-14097613)
chr8 (381-502)||(43532002-43532123)
chr8 (381-475)||(5076212-5076306)
chr8 (452-538)||(39870823-39870909)
chr8 (381-492)||(20669603-20669714)
chr8 (426-477)||(39047285-39047336)
chr8 (453-535)||(1218689-1218771)
chr8 (379-475)||(5015432-5015528)
chr8 (452-540)||(39872243-39872330)
chr8 (453-540)||(42183567-42183654)
chr8 (381-475)||(22675835-22675929)
chr8 (495-540)||(43532506-43532551)
chr8 (381-445)||(32077047-32077111)
chr8 (425-475)||(9512449-9512499)
chr8 (431-540)||(4412598-4412707)
chr8 (463-540)||(37226988-37227065)
chr8 (346-394)||(14998887-14998934)
[»] chr5 (17 HSPs)
chr5 (411-540)||(40018045-40018174)
chr5 (447-540)||(36347902-36347995)
chr5 (382-477)||(20882964-20883059)
chr5 (426-486)||(12143864-12143924)
chr5 (427-477)||(29195262-29195312)
chr5 (334-394)||(14410721-14410781)
chr5 (452-540)||(14410828-14410916)
chr5 (452-540)||(25994441-25994529)
chr5 (381-444)||(26654384-26654447)
chr5 (381-444)||(26925969-26926032)
chr5 (483-540)||(15106436-15106493)
chr5 (381-477)||(2743806-2743902)
chr5 (452-540)||(25995018-25995106)
chr5 (381-449)||(32911311-32911379)
chr5 (453-540)||(34954921-34955008)
chr5 (334-363)||(14410276-14410305)
chr5 (452-540)||(26092468-26092556)
[»] chr1 (16 HSPs)
chr1 (402-540)||(46190278-46190415)
chr1 (381-514)||(28539462-28539595)
chr1 (426-477)||(16313965-16314016)
chr1 (331-394)||(32713242-32713305)
chr1 (384-473)||(40552734-40552823)
chr1 (426-477)||(1181492-1181543)
chr1 (426-477)||(7014983-7015034)
chr1 (381-476)||(49000732-49000827)
chr1 (463-540)||(45886865-45886942)
chr1 (401-514)||(46090162-46090274)
chr1 (452-540)||(7013139-7013227)
chr1 (401-475)||(28485879-28485953)
chr1 (499-540)||(21485662-21485703)
chr1 (508-540)||(3657797-3657829)
chr1 (426-474)||(30703019-30703067)
chr1 (452-540)||(42294562-42294650)
[»] scaffold0015 (1 HSPs)
scaffold0015 (381-492)||(33542-33653)
[»] scaffold0012 (1 HSPs)
scaffold0012 (401-534)||(36237-36370)
[»] scaffold0007 (1 HSPs)
scaffold0007 (384-493)||(256439-256548)
[»] scaffold0027 (1 HSPs)
scaffold0027 (452-540)||(49116-49204)
[»] scaffold0051 (1 HSPs)
scaffold0051 (486-540)||(21123-21177)
[»] scaffold0010 (1 HSPs)
scaffold0010 (430-475)||(28604-28649)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 18796365 - 18796683
Alignment:
Q  30 attctgataaggatttttaccgcattcaaagcacatatcctccatgcttgtaattcctcacttctcctgcatgctatccatggtctattttattgtataa 129  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18796365 attctgataaggatttttaccgcattcaaagcacaaatcctccatgcttgtaattcctcacctctcctgcatgctatccatggtctattttattgtataa 18796464  T
Q  130 atttcttt-gtaaattttggtggggcctaatttgatctatatgattgttgttttatctatattaatgtctaaatatatgcttgaactgtcatgatctctg 228  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||                  ||||||||||||||| ||||||||||||||||||||    
T  18796465 atttcttttgtaaattttggtggggcctaatttcatctatatgattc-----------------atgtctaaatatatgtttgaactgtcatgatctctg 18796547  T
Q  229 ttccaataatgaaaaggaaaaacgaatatttatcatgcacttggccttctagacattaaggtcccacccattaaacattcaagcatgcagagaattgaaa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18796548 ttccaataatgaaaaggaaaaacgaatatttatcatgcacttggccttctagacattaaggtcccacccattaaacattcaagcatgcagagaattgaaa 18796647  T
Q  329 attgcaaaaacaaaacttgcgtgagttaactcacgt 364  Q
    |||||||||||||||| ||| |||||||||||||||    
T  18796648 attgcaaaaacaaaacctgcctgagttaactcacgt 18796683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 46273473 - 46273546
Alignment:
Q  402 tttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||||| ||||||||  || ||||||||||||||||||||||||   |||||||| ||||||||||||||    
T  46273473 tttacacatgtgttacttaattagcgcagcgttagttaactaacacattaatttacacttgcgttagttaacta 46273546  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 453 - 540
Target Start/End: Original strand, 39294906 - 39294993
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||  ||| |||||||||||| ||| || |||||||| | ||||||||| |||||| ||||||||||||||| |||||| ||||    
T  39294906 tttacacgtgcgctagttaactagcgcaggggcattttgggcatggctgcagggtgcgagtgttttgtgctgggtggagagcaaaatt 39294993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 538
Target Start/End: Complemental strand, 13798582 - 13798500
Alignment:
Q  456 acactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaa 538  Q
    ||||| |||||| ||||||||| |||||  |||||||| | |||||||||  ||||| ||||||||||||| |||||||||||    
T  13798582 acacttgcgttacttaactagcgcagagacattttgggaatggctgcagggcgcgagtgttttgtgctgggggaagagcagaa 13798500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 540
Target Start/End: Complemental strand, 20188315 - 20188237
Alignment:
Q  462 gcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||| ||||||||| | ||| || |||||||| || ||||||||| ||||| ||||||||||||||| |||||||||||    
T  20188315 gcgtgagttaactaacgcaggggcattttgggcaacgctgcaggacgcgagtgttttgtgctgggtggagagcagaatt 20188237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 426 - 476
Target Start/End: Original strand, 44226518 - 44226568
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactag 476  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||||||    
T  44226518 cgcagcgttagttaactaacacatagtttttcacttgcgttggttaactag 44226568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 526
Target Start/End: Complemental strand, 31877470 - 31877374
Alignment:
Q  430 gcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctggg 526  Q
    |||||||||||||||| |||| ||||||||| ||||||||||| || ||||| |  ||||| || |  |||| |||| ||||| |||||||||||||    
T  31877470 gcgttagttaactaacgcataattttacacttgcgttagttaattaacacagggacatttttggcatagctgtaggacgcgagtgttttgtgctggg 31877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 430 - 477
Target Start/End: Original strand, 432933 - 432980
Alignment:
Q  430 gcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  432933 gcgttagttaactaacgcataattttacacttgcgttagttaactagc 432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 12629767 - 12629878
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcaca 480  Q
    |||||||||||||| |  |||||||||| ||||| ||||| || || | | || ||||||||||| || | ||||||||  | |||||||||||| | ||    
T  12629767 gtgagttaactcacgcgttgttttacacttgcgtgacttaggtcacactgtgtaagttaactaacgcaaaattttacacatgtgttagttaactaacgca 12629866  T
Q  481 gaggtattttgg 492  Q
    ||||||||||||    
T  12629867 gaggtattttgg 12629878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 538
Target Start/End: Complemental strand, 30859841 - 30859755
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaa 538  Q
    ||||||||| ||||||||||||| || ||| || ||||| || | |||||||||  ||||| ||||||||| ||| |||||||||||    
T  30859841 ttttacacttgcgttagttaacttgcgcaggggcatttttggaatggctgcagggcgcgagtgttttgtgcagggggaagagcagaa 30859755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 475
Target Start/End: Complemental strand, 36653321 - 36653278
Alignment:
Q  432 gttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||    
T  36653321 gttagttaactaacacacaattttacacttgcgttagttaacta 36653278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 23943723 - 23943773
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    ||||| ||||||||||||| | |||||||||||||  ||||||||||||||    
T  23943723 acgcaacgttagttaactagcgcatagttttacacctgcgttagttaacta 23943773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 514
Target Start/End: Original strand, 23245935 - 23246024
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcg 514  Q
    |||||||||||||||| |||| || ||||| |||||  ||||||||||||||  ||  || ||||| || | ||||||||| ||||||||    
T  23245935 acgcagcgttagttaagtaacgcagagtttaacacttacgttagttaactagtgcaagggcatttttggaatggctgcagggtgcgagcg 23246024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 478
Target Start/End: Original strand, 38458300 - 38458397
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagca 478  Q
    |||||||||||||| || |||||||||| |||  |  ||| ||  ||||||||||||||| || | ||||  |||||||| |||| ||||||||||||    
T  38458300 gtgagttaactcacgcagtgttttacacttgcactctttaagttgcgcagcgttagttaagtagcgcatatatttacacttgcgtgagttaactagca 38458397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 24504112 - 24504204
Alignment:
Q  382 tgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaact 474  Q
    |||||||||||||| | |||||||||| ||||| ||||| |  || | |||| |||||| ||||||| | ||||||||  ||||| |||||||    
T  24504112 tgagttaactcacaaagtgttttacacttgcgtgacttaagccacactgcgtgagttaattaacacagaattttacacatgcgtttgttaact 24504204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 172; Significance: 5e-92; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 108 - 311
Target Start/End: Complemental strand, 188298 - 188095
Alignment:
Q  108 catggtctattttattgtataaatttctttgtaaattttggtggggcctaatttgatctatatgattgttgttttatctatattaatgtctaaatatatg 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  188298 catggtctatttaattgtataaatttctttgtaaattttggtggggcctaatttgatctatatgattgttgttttgtctatattcatgtctaaatatatg 188199  T
Q  208 cttgaactgtcatgatctctgttccaataatgaaaaggaaaaacgaatatttatcatgcacttggccttctagacattaaggtcccacccattaaacatt 307  Q
     |||||| |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  188198 tttgaacagtcatgatctctgtcccaatagtgaaaaggaaaaacaaatatttatcatgcacttggccttctagacattaaggtcccacccattaaacatt 188099  T
Q  308 caag 311  Q
    ||||    
T  188098 caag 188095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 321 - 475
Target Start/End: Complemental strand, 185596 - 185441
Alignment:
Q  321 aattgaaaattgcaaaaacaaaacttgcgtgagttaactcacgtgcgtgttaaatttagtgtgagttaactcacacaatgtttt-acacatgcgttactt 419  Q
    |||||||||||||||||||||||| ||||||| ||||||||||   |||||||||| ||  |||||||||||||  |||||||| ||| |||||||||||    
T  185596 aattgaaaattgcaaaaacaaaacctgcgtgaattaactcacgcaggtgttaaattcagcatgagttaactcacgtaatgtttttacatatgcgttactt 185497  T
Q  420 acgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    | |||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  185496 aagtaacgcagcgttagttaactaacgcatagttttacacttgcgttagttaacta 185441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 110 - 281
Target Start/End: Original strand, 44643904 - 44644074
Alignment:
Q  110 tggtctattttattgtataaatttctttgtaaattttggtggggcctaatttgatctatatgattgttgttttatctatattaatgtctaaatatatgct 209  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |    
T  44643904 tggtctattttattgtataaatttctt-gtaaatttcggtgggtcctaatttgatctatatgcttgttgttttgtctatattcatgtctaaatatatgtt 44644002  T
Q  210 tgaactgtcatgatctctgttccaataatgaaaaggaaaaacgaatatttatcatgcacttggccttctaga 281  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  44644003 tgaactgtcatgatctgtgtcccaatagtgaaaaggaaaaacgaatatttatcatgcacttggacttctaga 44644074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 381 - 538
Target Start/End: Complemental strand, 20513608 - 20513451
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcaca 480  Q
    |||||||||||||| || ||||||||||||| |   ||||  | || |||||||||||||||| | |||||||||||||| |||||||||||||| | ||    
T  20513608 gtgagttaactcacgcagtgttttacacatgtgcatcttaattgacacagcgttagttaactatcgcatagttttacacttgcgttagttaactaacgca 20513509  T
Q  481 gaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaa 538  Q
     |||||||||||| ||| |||||||   |||| ||||||||| | | |||||||||||    
T  20513508 aaggtattttgggcaagactgcagggcacgagtgttttgtgcagagggaagagcagaa 20513451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 452 - 538
Target Start/End: Complemental strand, 52562697 - 52562611
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaa 538  Q
    |||||||||  ||||||||||||||| ||| ||||||||||| |||||||||||   |||| |||||||||||||||||||||||||    
T  52562697 ttttacacttacgttagttaactagcgcaggggtattttgggcaaggctgcagggcacgagtgttttgtgctgggtgaagagcagaa 52562611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 30842067 - 30842163
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||| ||||||||| || || |||||| || ||||||||| |||||||||||||||||||||||| ||||| |||||| |  |||||||||||||||    
T  30842067 gtgatttaactcacgcagtgctttacatatacgttacttaagtaacgcagcgttagttaactaacgcataggtttacaattacgttagttaactagc 30842163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 6778615 - 6778709
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||||||||| || || ||||||||||||||||||| ||| | || |||||||||||||||||||   |||||||| | ||||||||||||    
T  6778615 gtgagttaactcacgcagtgctttacacatgcgttacttaagtagcacaacgttagttaactaacacattaatttacacttgtgttagttaacta 6778709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 464 - 535
Target Start/End: Original strand, 16281018 - 16281089
Alignment:
Q  464 gttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagca 535  Q
    ||||||||||||||||| |||||||||| ||| |||| |||| |||||| ||||||||||||||| ||||||    
T  16281018 gttagttaactagcacaaaggtattttgagtatggcttcagggtgcgagtgttttgtgctgggtggagagca 16281089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 410 - 477
Target Start/End: Complemental strand, 46183068 - 46183001
Alignment:
Q  410 tgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||| ||||| || |||| |||||||||||||||| |||| ||||||||| |||||| |||||||||    
T  46183068 tgcgtgacttaagtcacgccgcgttagttaactaacgcataattttacacttgcgttatttaactagc 46183001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 51171146 - 51171083
Alignment:
Q  331 tgcaaaaacaaaacttgcgtgagttaactcacgtgcgtgttaaatttagtgtgagttaactcac 394  Q
    |||||||||||||||||||||||||||||||||  |||||||| || || |||| |||| ||||    
T  51171146 tgcaaaaacaaaacttgcgtgagttaactcacgcacgtgttaatttcagcgtgacttaagtcac 51171083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 465
Target Start/End: Complemental strand, 29523035 - 29522953
Alignment:
Q  383 gagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgt 465  Q
    |||||||||||| || |||||||||| ||||    ||| ||  |||||||||||||||||||| |||||||||||||| ||||    
T  29523035 gagttaactcacgcagtgttttacacttgcgcgctttaagttgcgcagcgttagttaactaacgcatagttttacacttgcgt 29522953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 475
Target Start/End: Original strand, 54336763 - 54336801
Alignment:
Q  437 ttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  54336763 ttaactaacacatagttttacacttgcgttagttaacta 54336801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 53630277 - 53630350
Alignment:
Q  402 tttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||| |||||||||||||| ||| ||||  |||||||||||||| |||   |||||||| ||||||||||||||    
T  53630277 tttatacatgcgttacttaagtagcgcaatgttagttaactaacgcattaatttacacttgcgttagttaacta 53630350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 540
Target Start/End: Original strand, 49304075 - 49304162
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||| ||| | |||||||||| ||  || ||||||| || ||||||||| ||| || |||||||||| ||||||||||| ||||    
T  49304075 tttacacttgcgctggttaactagcgcatgggcattttggatatggctgcagggtgcaagtgttttgtgctaggtgaagagcaaaatt 49304162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 452 - 535
Target Start/End: Original strand, 52562778 - 52562861
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagca 535  Q
    ||||||||| ||| |||||||||||| ||| ||||||||||  ||||||||| |  || || |||||||| |||||||| ||||    
T  52562778 ttttacacttgcgctagttaactagcgcaggggtattttggacaaggctgcaagtcgcaagtgttttgtgttgggtgaaaagca 52562861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 475
Target Start/End: Original strand, 7789916 - 7789990
Alignment:
Q  401 ttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||| ||||| ||||| || || | ||||||||||| |||| |||| ||||||||  ||||||||||||||    
T  7789916 ttttacacgtgcgtgacttaagtcacactgcgttagttaagtaacgcataattttacacctgcgttagttaacta 7789990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 4041096 - 4041136
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgg 492  Q
    ||||||||| |||||||||||||||||||  ||||||||||    
T  4041096 ttttacacttgcgttagttaactagcacatgggtattttgg 4041136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 46637054 - 46637106
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||| ||||| ||||||| | |||||||||||| | ||||||||||||||||    
T  46637054 acgcatcgttacttaactagcgcatagttttacatttgcgttagttaactagc 46637106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 383 - 540
Target Start/End: Complemental strand, 9929687 - 9929530
Alignment:
Q  383 gagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacaga 482  Q
    |||||||||||  || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |  ||     
T  9929687 gagttaactcatgcagtgttttacacatgcgttacttaagtaacgcagcgttagttaactaacacatagttttacacttgcgttaattaactaacgtagg 9929588  T
Q  483 ggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    || ||||| || ||  |||||||  ||||| ||||||||||||||| |||||||||||    
T  9929587 ggcatttttggcaacactgcagggcgcgagtgttttgtgctgggtggagagcagaatt 9929530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 412 - 540
Target Start/End: Original strand, 4410219 - 4410345
Alignment:
Q  412 cgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcga 511  Q
    ||||||||| || || ||||||||||||||||| ||||||||||||||| |||||||||||||| | ||   ||||||| || |||||||||||| ||||    
T  4410219 cgttacttaagtgacacagcgttagttaactaatacatagttttacacttgcgttagttaactaac-catgagtattttaggcaaggctgcaggaagcga 4410317  T
Q  512 gcgttttgtgctgggtgaagagcagaatt 540  Q
      ||||| | || ||||||||||| ||||    
T  4410318 atgtttt-ttctaggtgaagagcaaaatt 4410345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 7527018 - 7527114
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||||||||| |||||||||| ||||     || ||  |||| |||||||||||||||||||| ||||||||| |||| |||||||||||    
T  7527018 gtgagttaactcacacagtgttttacacttgcgcgctgtaagttgcgcaacgttagttaactaacacataattttacacttgcgtgagttaactagc 7527114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 453 - 540
Target Start/End: Original strand, 11599968 - 11600055
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||  || |||||||||||| |||||| |||||||  | ||||||||| ||||||||   |||||||||||||||||| ||||    
T  11599968 tttacacttacgctagttaactagcgcagaggcattttggtcatggctgcagggtgcgagcgaaatgtgctgggtgaagagcaaaatt 11600055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 476
Target Start/End: Original strand, 35018737 - 35018787
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactag 476  Q
    ||||||||||||||| |||| |||||||||||||| |||| ||||||||||    
T  35018737 cgcagcgttagttaaataacgcatagttttacacttgcgtgagttaactag 35018787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 1031790 - 1031831
Alignment:
Q  436 gttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  1031790 gttaactaacacatagtttttcacttgcgttagttaactagc 1031831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 32879677 - 32879621
Alignment:
Q  416 acttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaa 472  Q
    ||||| || |||| ||||||||||| ||||||||| ||||||||| |||||||||||    
T  32879677 acttaagtcacgctgcgttagttaagtaacacataattttacacttgcgttagttaa 32879621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 32879794 - 32879731
Alignment:
Q  331 tgcaaaaacaaaacttgcgtgagttaactcacgtgcgtgttaaatttagtgtgagttaactcac 394  Q
    |||||||| ||||||||| ||||||||||||||   ||||||| || || ||||||||||||||    
T  32879794 tgcaaaaataaaacttgcttgagttaactcacgcatgtgttaatttcagcgtgagttaactcac 32879731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 540
Target Start/End: Complemental strand, 5741267 - 5741179
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| ||||||| |||||||| ||  ||||||||||  | |||||||||| ||||||     |||| |||||||||||||||||    
T  5741267 ttttacacttgcgttagataactagcgcattggtattttggtcatggctgcaggacgcgagcaaaaagtgcagggtgaagagcagaatt 5741179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 540
Target Start/End: Original strand, 5741513 - 5741601
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| |||||||||||||| | |||  |||||||||  | |||||||||  |||||||    |||| |||||||||||||||||    
T  5741513 ttttacacttgcgttagttaactaacgcaggtgtattttggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagcagaatt 5741601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 381 - 475
Target Start/End: Complemental strand, 21283893 - 21283799
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    ||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21283893 gtgagttaacttacgcagtgttttacacatgcgttacttaagtaacgcagcgttagttaactaacacatagttttacacttgcgttagttaacta 21283799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 381 - 514
Target Start/End: Complemental strand, 42704499 - 42704366
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcaca 480  Q
    ||||||||||||||  | || |||||||||| |||||||| ||| |||| |||||||||||||||||||   |||||||| |||||||||| ||| | ||    
T  42704499 gtgagttaactcacgtagtgctttacacatgtgttacttaagtagcgcaacgttagttaactaacacattaatttacacttgcgttagttagctaacgca 42704400  T
Q  481 gaggtattttgggtaaggctgcaggatgcgagcg 514  Q
      ||||||||||| ||| |||||||  |||||||    
T  42704399 tgggtattttgggcaagcctgcagggcgcgagcg 42704366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 453 - 540
Target Start/End: Complemental strand, 52031719 - 52031633
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||| |||||||||||||| | || |||||||||  | |||||||||||| ||||| |||||||||||||||||||||||||||    
T  52031719 tttacacttgcgttagttaactaacgca-aggtattttaagcaaggctgcaggacgcgagtgttttgtgctgggtgaagagcagaatt 52031633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 32305000 - 32304904
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||||||||||||||   |||||||||| ||||    ||| || ||||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  32305000 gtgagttaactcacatcgtgttttacacttgcgcgctttaagttacgcaacgttagttaactaacacatagttttacacttgcgtgagttaactagc 32304904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 425 - 540
Target Start/End: Complemental strand, 16935585 - 16935471
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctg 524  Q
    |||||||||||||||| || |||| ||||| ||||| |||||| ||||||||| ||  ||||| ||||  |||||||||||  ||||| |||||||||||    
T  16935585 acgcagcgttagttaagtagcacagagtttaacacttgcgttatttaactagcgcaagggtatcttggacaaggctgcagggcgcgagtgttttgtgctg 16935486  T
Q  525 ggtgaagagcagaatt 540  Q
    || ||| |||||||||    
T  16935485 gg-gaaaagcagaatt 16935471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 452 - 540
Target Start/End: Complemental strand, 32303890 - 32303802
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| |||||||||||||||| ||  |||||||| || | | |||||||  ||||| |||||||| ||||||||||||||||||    
T  32303890 ttttacacttgcgttagttaactagcgcaatggtattttcggaatgcctgcagggcgcgagtgttttgtgttgggtgaagagcagaatt 32303802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 431 - 535
Target Start/End: Complemental strand, 42040501 - 42040398
Alignment:
Q  431 cgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaa 530  Q
    |||||||||||||||||||||||||||||  |||||||||||||| | ||| |||||||| ||  | ||||||||  ||||| ||||||||| | | |||    
T  42040501 cgttagttaactaacacatagttttacacgtgcgttagttaactaacgcaggggtattttagg-catgctgcagggcgcgagtgttttgtgcagagggaa 42040403  T
Q  531 gagca 535  Q
    |||||    
T  42040402 gagca 42040398  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 22923316 - 22923367
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  22923316 cgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagc 22923367  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 22927969 - 22928020
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  22927969 cgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagc 22928020  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 22984248 - 22984299
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  22984248 cgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagc 22984299  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 22997836 - 22997887
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  22997836 cgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagc 22997887  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 540
Target Start/End: Original strand, 18846213 - 18846270
Alignment:
Q  483 ggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||||| | |||||||||  ||||| |||||||||||||||||||||||||||    
T  18846213 ggtattttgggcacggctgcagggcgcgagtgttttgtgctgggtgaagagcagaatt 18846270  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 12657194 - 12657242
Alignment:
Q  429 agcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  12657194 agcgttagttaactaacacatagtttttcacttgtgttagttaactagc 12657242  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 32304723 - 32304791
Alignment:
Q  326 aaaattgcaaaaacaaaacttgcgtgagttaactcacgtgcgtgttaaatttagtgtgagttaactcac 394  Q
    |||| ||||||||||||||||||||||||||||||||    ||||||| || || ||||||||||||||    
T  32304723 aaaaatgcaaaaacaaaacttgcgtgagttaactcacacatgtgttaatttcagcgtgagttaactcac 32304791  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 45864948 - 45865000
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||| ||||||||| |||||||||||||| || |||||||||||||    
T  45864948 acgcagcgttacttaactaacgcatagttttacacttgcattagttaactagc 45865000  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 54185604 - 54185656
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||| ||||||| | |||||||||||||| ||||||||||||||||    
T  54185604 acgcagcgttacttaactagcgcatagttttacacttgcgttagttaactagc 54185656  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 453 - 540
Target Start/End: Complemental strand, 33983844 - 33983757
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||| | | ||||||||||||| ||||| |||||||  | ||||||||| ||||||||   |||||||||||||||||| ||||    
T  33983844 tttacacttgtgctagttaactagcatagaggcattttggacatggctgcagggtgcgagcgaaatgtgctgggtgaagagcaaaatt 33983757  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 156153 - 156103
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    ||||||||||| ||||||| |||||| ||||||||| ||||||||||||||    
T  156153 acgcagcgttaattaactagcacataattttacacttgcgttagttaacta 156103  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 475
Target Start/End: Original strand, 11661016 - 11661090
Alignment:
Q  401 ttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||| ||| | ||||| || |||| ||||||||||| |||| |||| ||||||||| ||||||||||||||    
T  11661016 ttttacacgtgcatgacttaagtcacgctgcgttagttaagtaacgcataattttacacttgcgttagttaacta 11661090  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 11660869 - 11660824
Alignment:
Q  430 gcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  11660869 gcgttagttaagtaacacataattttacacttgcgttagttaacta 11660824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 540
Target Start/End: Complemental strand, 18845398 - 18845341
Alignment:
Q  483 ggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||||| | ||||||| |  ||||| |||||||||||||||||||||||||||    
T  18845398 ggtattttgggcacggctgcaaggcgcgagtgttttgtgctgggtgaagagcagaatt 18845341  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 1939318 - 1939414
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||| ||||| |||||||||| ||||  |||||  |   ||||||||||||||||| | |||   |||||||| ||||||||||||||||    
T  1939318 gtgagttaacttacacagtgttttacacttgcgcaacttaacttgtgcagcgttagttaactagcgcatgcatttacacttgcgttagttaactagc 1939414  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 39466255 - 39466346
Alignment:
Q  384 agttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    ||||||||||| || || ||||||| |||| |||||| ||  | || | ||||||||||||| ||||  |||||||| ||||||||||||||    
T  39466255 agttaactcacgcagtgatttacacttgcgatacttaagttgcacaacattagttaactaacgcatacatttacacttgcgttagttaacta 39466346  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 540
Target Start/End: Complemental strand, 43501804 - 43501717
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||| ||| |||||||||||| ||| || |||||||  | || |||||| ||||||||   |||||||||||||||||| ||||    
T  43501804 tttacacttgcgctagttaactagcgcaggggcattttggacatggttgcagggtgcgagcgaaatgtgctgggtgaagagcaaaatt 43501717  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 540
Target Start/End: Complemental strand, 45042190 - 45042103
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||| |||| |||||||||||| ||| || ||| | |  | ||||||||||| ||||  ||||||||||||||||||||| ||||    
T  45042190 tttacacacgcgctagttaactagcgcaggggcattatagacatggctgcaggatacgagtattttgtgctgggtgaagagcaaaatt 45042103  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 540
Target Start/End: Original strand, 20779963 - 20780004
Alignment:
Q  499 ctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||  ||||| |||||||||||||||||||||||||||    
T  20779963 ctgcagggcgcgagtgttttgtgctgggtgaagagcagaatt 20780004  T

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Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 381 - 540
Target Start/End: Complemental strand, 31116320 - 31116161
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcaca 480  Q
    ||||||||||||||||| ||||||| || ||||||||||| || ||||| ||||||||||||||||||||  |||||||| |||||||||||||| | ||    
T  31116320 gtgagttaactcacacagtgttttatacttgcgttacttaagtgacgcaacgttagttaactaacacataaatttacacttgcgttagttaactaacgca 31116221  T
Q  481 gaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||| |||| || || ||||| || || |||||   ||||||| | |||||||||||||    
T  31116220 gaggttttttcggcaaagctgctgggtgggagcgaaatgtgctgcgggaagagcagaatt 31116161  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 382 - 538
Target Start/End: Original strand, 187212 - 187368
Alignment:
Q  382 tgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacag 481  Q
    ||||||||||||  || |||||||||||||| ||||||| |||||| |||||| |||||||||| |||||||||||||| |||||||||||||| | ||     
T  187212 tgagttaactcatgcagtgttttacacatgcattacttaagtaacgtagcgtttgttaactaacgcatagttttacacttgcgttagttaactaacgcat 187311  T
Q  482 aggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaa 538  Q
     || ||||| | |||  |||||||| ||| | |||||||| |||||| |||||||||    
T  187312 gggcattttcgataacactgcaggacgcgggtgttttgtgttgggtggagagcagaa 187368  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 400 - 511
Target Start/End: Complemental strand, 6401838 - 6401727
Alignment:
Q  400 gttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggc 499  Q
    ||||||||| ||||||||||| || |||| ||||||||||||||||||||| ||||| ||| |||||||||||||| ||||   ||||||| || | |||    
T  6401838 gttttacacttgcgttacttaagtcacgctgcgttagttaactaacacataattttatacttgcgttagttaactaacacatgagtattttcggaatggc 6401739  T
Q  500 tgcaggatgcga 511  Q
    |||||| |||||    
T  6401738 tgcagggtgcga 6401727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 453 - 540
Target Start/End: Original strand, 37058118 - 37058205
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||| ||| ||||||| |||| ||| || |||||||| | ||||||||| |||||| |||||||||||||||||||||| ||||    
T  37058118 tttacacttgcgctagttaattagcgcaggggcattttgggcatggctgcagggtgcgagtgttttgtgctgggtgaagagcaaaatt 37058205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 379 - 477
Target Start/End: Original strand, 19380170 - 19380268
Alignment:
Q  379 gtgtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||||||||||| |||| ||||  ||||  |||||  |  |||||||||||||||||||| ||||  |||||||| ||||||||||||||||    
T  19380170 gtgtgagttaactcacacagtgttgtacatttgcgcaacttaacttgcgcagcgttagttaactaacgcatacatttacacttgcgttagttaactagc 19380268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 547
Target Start/End: Complemental strand, 4616067 - 4616019
Alignment:
Q  499 ctgcaggatgcgagcgttttgtgctgggtgaagagcagaatttttctta 547  Q
    |||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  4616067 ctgcaggatgcgagtgttttgtgctgggtgaagagcaaaattcttctta 4616019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 5289856 - 5289776
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagag 533  Q
    |||||||| ||| |||||||||| | ||| ||||||||||| | || |||||||||||||||   ||||||||||||||||    
T  5289856 tttacacttgcgctagttaactaacgcaggggtattttgggcatggttgcaggatgcgagcgaaatgtgctgggtgaagag 5289776  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 453 - 540
Target Start/End: Original strand, 6729666 - 6729752
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||| ||| |||||||||||| ||| || |||||||| | ||||||||| ||||||||   |||| ||||||||||||||||||    
T  6729666 tttacacttgcgatagttaactagcgcaggggcattttgggcatggctgcagg-tgcgagcgaaatgtgttgggtgaagagcagaatt 6729752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 538
Target Start/End: Complemental strand, 33710886 - 33710800
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaa 538  Q
    ||||||||| |||||||||||||||| ||| |||||||| || ||  ||||| |  ||||| ||||||||||||| | |||||||||    
T  33710886 ttttacacttgcgttagttaactagcgcaggggtatttttggcaacactgcatggcgcgagtgttttgtgctggggggagagcagaa 33710800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 540
Target Start/End: Complemental strand, 41191408 - 41191334
Alignment:
Q  466 tagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||||||||||| || |||||| | | | ||||||||||||||||   | |||||||||||||||||||||    
T  41191408 tagttaactagcacaggggcattttgcgcatgactgcaggatgcgagcgaaatttgctgggtgaagagcagaatt 41191334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 5848087 - 5848139
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||| ||||||| | ||||||||||||||  |||||||||||||||    
T  5848087 acgcagcgttacttaactagcgcatagttttacacttacgttagttaactagc 5848139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 14414139 - 14414191
Alignment:
Q  484 gtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcag 536  Q
    |||||||||| || ||||||||  ||||||||||||||||||| |||||||||    
T  14414139 gtattttgggcaacgctgcagggcgcgagcgttttgtgctgggggaagagcag 14414191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 535
Target Start/End: Complemental strand, 35150584 - 35150502
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagca 535  Q
    |||||||| ||| |||||||||||| ||| || |||||||| | ||||||||| | | ||||   ||||||||||||||||||    
T  35150584 tttacacttgcgctagttaactagcgcagtggcattttgggcatggctgcagggtacaagcgaaatgtgctgggtgaagagca 35150502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 381 - 473
Target Start/End: Original strand, 28036526 - 28036618
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaac 473  Q
    |||||||||||||| || |||||||||| |||| |  ||| ||  |||||| ||||||||||| | ||||  |||||||| |||| |||||||    
T  28036526 gtgagttaactcacgcagtgttttacacttgcgctctttaagttgcgcagctttagttaactagcgcatacatttacacttgcgtgagttaac 28036618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 34233556 - 34233508
Alignment:
Q  346 tgcgtgagttaactcacgtgcgtgttaaatttagtgtgagttaactcac 394  Q
    |||||||||||||||| ||| |||||| ||| || ||||||||||||||    
T  34233556 tgcgtgagttaactcaagtgggtgttatattcagcgtgagttaactcac 34233508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 384 - 498
Target Start/End: Original strand, 7842 - 7956
Alignment:
Q  384 agttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagag 483  Q
    ||||||||| |||| |||||||||||||||||||||| ||| |||| ||||||||||||||  ||||  |||||||| |||||||||||||| |||| ||    
T  7842 agttaactcgcacagtgttttacacatgcgttacttaagtagcgcatcgttagttaactaatgcataaatttacacttgcgttagttaactatcacatag 7941  T
Q  484 gtattttgggtaagg 498  Q
    |||||||||| ||||    
T  7942 gtattttgggcaagg 7956  T

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Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 384 - 498
Target Start/End: Original strand, 14097499 - 14097613
Alignment:
Q  384 agttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagag 483  Q
    ||||||||| |||| |||||||||||||||||||||| ||| |||| ||||||||||||||  ||||  |||||||| |||||||||||||| |||| ||    
T  14097499 agttaactcgcacagtgttttacacatgcgttacttaagtagcgcatcgttagttaactaatgcataaatttacacttgcgttagttaactatcacatag 14097598  T
Q  484 gtattttgggtaagg 498  Q
    |||||||||| ||||    
T  14097599 gtattttgggcaagg 14097613  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 381 - 502
Target Start/End: Complemental strand, 43532123 - 43532002
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcaca 480  Q
    |||||||||||||| || || ||||||||||| ||| ||| ||| || | |||||| |||||||||||||  |||||||  |||||||||||||| | ||    
T  43532123 gtgagttaactcacgcagtgctttacacatgcattaattaagtagcgtaacgttaggtaactaacacataaatttacacctgcgttagttaactaacgca 43532024  T
Q  481 gaggtattttgggtaaggctgc 502  Q
    | ||||||||||| ||||||||    
T  43532023 ggggtattttgggaaaggctgc 43532002  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 5076212 - 5076306
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||||||||| || |||||||||| ||||  |||||  | |||||| |||||||||||| | |||||||||||| | ||||||||||||||    
T  5076212 gtgagttaactcacgcagtgttttacacttgcgcaacttaattgacgcagtgttagttaactagcgcatagttttacatttgcgttagttaacta 5076306  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 538
Target Start/End: Complemental strand, 39870909 - 39870823
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaa 538  Q
    ||||||||| |||||||||||||||| ||  | ||||||||| ||| ||||| || || || |||||||||||||||||||||||||    
T  39870909 ttttacacttgcgttagttaactagcgcaaggatattttgggcaagactgcaagacgcaagtgttttgtgctgggtgaagagcagaa 39870823  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 381 - 492
Target Start/End: Complemental strand, 20669714 - 20669603
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcaca 480  Q
    |||||||||||||| || || || |||||||||||||||| |||  ||| ||||||||||||||||| |   |||||||| ||| |||||||||| | ||    
T  20669714 gtgagttaactcacgcagtgcttgacacatgcgttacttaagtagtgcatcgttagttaactaacacgttaatttacacttgcgctagttaactaacgca 20669615  T
Q  481 gaggtattttgg 492  Q
      ||||||||||    
T  20669614 tgggtattttgg 20669603  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 39047285 - 39047336
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  39047285 cgcagcgttagttaactaacgcatagtttttcacttgcgttagttaactagc 39047336  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 453 - 535
Target Start/End: Original strand, 1218689 - 1218771
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagca 535  Q
    |||||||| ||| |||||||||||| || |||||||||| ||| ||||| | | |||||| || |||||||||||||||||||    
T  1218689 tttacacttgcgctagttaactagcgcataggtattttgagtatggctgtaaggtgcgagtgtattgtgctgggtgaagagca 1218771  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 475
Target Start/End: Complemental strand, 5015528 - 5015432
Alignment:
Q  379 gtgtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    ||||| ||||||| || || ||||| |||| ||||  |||||  | ||||||||||||||||||| | |||||||||||||  ||||||||||||||    
T  5015528 gtgtgcgttaactaacgcagtgtttaacacttgcgcaacttaattgacgcagcgttagttaactagcgcatagttttacacgtgcgttagttaacta 5015432  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 540
Target Start/End: Original strand, 39872243 - 39872330
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| |||||||||||  ||| ||| | ||||||| | ||||||||||| |||||  |||||||| ||||||||||||||||||    
T  39872243 ttttacacttgcgttagttaatcagcgcag-gatattttgagcaaggctgcagggtgcgaatgttttgtgttgggtgaagagcagaatt 39872330  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 453 - 540
Target Start/End: Original strand, 42183567 - 42183654
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||| ||| |||||||||||| ||  |  |||||||  | ||||||||| |||||| |||||||||||||||||||||| ||||    
T  42183567 tttacacttgcgctagttaactagcgcatggacattttggacatggctgcagggtgcgagtgttttgtgctgggtgaagagcaaaatt 42183654  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 22675835 - 22675929
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||||||||| || ||||||||||||||||   |||  || |||| |||||||||||| || ||||||| | |||| | ||||||||||||    
T  22675835 gtgagttaactcacgcagtgttttacacatgcgtatgttaaatatcgcatcgttagttaacttacgcatagttatgcacttgggttagttaacta 22675929  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 540
Target Start/End: Original strand, 43532506 - 43532551
Alignment:
Q  495 aaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||    
T  43532506 aaggctgcagggcgcgagtgttttgtgctgggtgaagagcagaatt 43532551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 445
Target Start/End: Original strand, 32077047 - 32077111
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaac 445  Q
    ||||||||||| || || |||||||||| |||||| |||| || |||| ||||||||||||||||    
T  32077047 gtgagttaactaacgcattgttttacacttgcgtttcttaagtcacgccgcgttagttaactaac 32077111  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 9512449 - 9512499
Alignment:
Q  425 acgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||||||||||| ||||||| ||||| ||||| |||||| |||||||    
T  9512449 acgcagcgttagttaaataacacagagtttaacacttgcgttacttaacta 9512499  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 540
Target Start/End: Complemental strand, 4412707 - 4412598
Alignment:
Q  431 cgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaa 530  Q
    |||||||||| || | |||||||||||||| |||| |||||| |||| || |||||  || || | |||||||||  ||||||    |||||||||| ||    
T  4412707 cgttagttaattagcgcatagttttacacttgcgtgagttaattagcgcaaaggtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggtaaa 4412608  T
Q  531 gagcagaatt 540  Q
    ||||||||||    
T  4412607 gagcagaatt 4412598  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 540
Target Start/End: Complemental strand, 37227065 - 37226988
Alignment:
Q  463 cgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||||||||||||| |||||  || || | |||||||||  ||||||    |||||||||||||||||||||||    
T  37227065 cgttagttaactagcacaaaggtaaatttggaatggctgcagggcgcgagcaaaatgtgctgggtgaagagcagaatt 37226988  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 14998934 - 14998887
Alignment:
Q  346 tgcgtgagttaactcacgtgcgtgttaaatttagtgtgagttaactcac 394  Q
    |||||||||||||||||||  ||||||||||| |||||| |||||||||    
T  14998934 tgcgtgagttaactcacgttagtgttaaattt-gtgtgacttaactcac 14998887  T

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Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 411 - 540
Target Start/End: Complemental strand, 40018174 - 40018045
Alignment:
Q  411 gcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcg 510  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||||||||||| | ||  |||||||| |  ||  |||||||  |||    
T  40018174 gcgttacttaagtaacgcagcattagttaactaacgcatagttttacacttgcgttagttaactaacgcatgggtattttcgacaacactgcagggcgcg 40018075  T
Q  511 agcgttttgtgctgggtgaagagcagaatt 540  Q
    || ||||||||||||||| |||||| ||||    
T  40018074 agtgttttgtgctgggtggagagcataatt 40018045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 447 - 540
Target Start/End: Original strand, 36347902 - 36347995
Alignment:
Q  447 catagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||| ||||| ||| ||||||||||||||||||||  |||||||||  |||| ||||||||||||| ||||||||||||||||||||| |||||    
T  36347902 cataattttatacttgcgttagttaactagcacaggagtattttggacaaggttgcaggatgcgagtgttttgtgctgggtgaagagccgaatt 36347995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 20883059 - 20882964
Alignment:
Q  382 tgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||||||||||||||||||| ||||   ||||  |  |||| || |||||||||||||||||||||| |||| ||||||||||||||||    
T  20883059 tgagttaactcacacaatgttttacacttgcgcatcttaacttgcgcaacgctagttaactaacacatagtttttcacttgcgttagttaactagc 20882964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 486
Target Start/End: Complemental strand, 12143924 - 12143864
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggta 486  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||||||||| || |||||    
T  12143924 cgcaacgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaaaggta 12143864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 29195312 - 29195262
Alignment:
Q  427 gcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  29195312 gcagcgttagttaactaacgcatagtttttcacttgcgttagttaactagc 29195262  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 14410721 - 14410781
Alignment:
Q  334 aaaaacaaaacttgcgtgagttaactcacgtgcgtgttaaatttagtgtgagttaactcac 394  Q
    ||||||||||||||||||||||||||||||  |||||||| || ||  |||||||||||||    
T  14410721 aaaaacaaaacttgcgtgagttaactcacgcacgtgttaatttcagcatgagttaactcac 14410781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 540
Target Start/End: Original strand, 14410828 - 14410916
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||||||||||||||||||||| ||| |||||||| || ||  ||||| |  || || |||||||| |||||||||||| |||||    
T  14410828 ttttacactcgcgttagttaactagcgcaggggtattttcggcaacactgcaaggcgcaagtgttttgtgttgggtgaagagcggaatt 14410916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 540
Target Start/End: Complemental strand, 25994529 - 25994441
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| || ||||||||||| | ||| |||||||| || | |  ||||||  ||||| |||||||||||||||||||||||||||    
T  25994529 ttttacacttgcattagttaactaacgcaggggtattttcggaatgcttgcagggcgcgagtgttttgtgctgggtgaagagcagaatt 25994441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 26654384 - 26654447
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaa 444  Q
    ||||||||||||||||| |||||| ||| ||||| ||||| || |||| |||||||||||||||    
T  26654384 gtgagttaactcacacagtgtttttcacttgcgtgacttaagtcacgccgcgttagttaactaa 26654447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 26925969 - 26926032
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaa 444  Q
    ||||||||||||||||| |||||| ||| ||||| ||||| || |||| |||||||||||||||    
T  26925969 gtgagttaactcacacagtgtttttcacttgcgtgacttaagtcacgccgcgttagttaactaa 26926032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 540
Target Start/End: Original strand, 15106436 - 15106493
Alignment:
Q  483 ggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||||||||||||||||| || |||||   |||||||||||||||||| ||||    
T  15106436 ggtattttgggtaaggctgcagggtgggagcgaaatgtgctgggtgaagagcaaaatt 15106493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 2743806 - 2743902
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||||||||||||| || |||||||||| |||| |  ||| ||  |||||||||||||||||| | ||||  ||||||||  ||| |||||||||||    
T  2743806 gtgagttaactcacgcagtgttttacacttgcgctctttaagttgcgcagcgttagttaactagcgcatacatttacacttacgtgagttaactagc 2743902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 540
Target Start/End: Original strand, 25995018 - 25995106
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| ||||||||||||||||  |   ||||||| || | |  ||||||  ||||| |||||||||||||||||||||||||||    
T  25995018 ttttacacttgcgttagttaactagcgtacgagtattttcggaatgcttgcagggcgcgagtgttttgtgctgggtgaagagcagaatt 25995106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 449
Target Start/End: Original strand, 32911311 - 32911379
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacat 449  Q
    |||||||||||||| || |||||||||||||||   |||| || |||  ||||||||||||||||||||    
T  32911311 gtgagttaactcacgcagtgttttacacatgcgcgtcttaagtgacgatgcgttagttaactaacacat 32911379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 540
Target Start/End: Original strand, 34954921 - 34955008
Alignment:
Q  453 tttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||| ||| |||||||||||| ||| || ||||| || | ||||||| | ||||||||   |||| ||||||||||||||||||    
T  34954921 tttacacttgcggtagttaactagcgcaggggcattttaggcatggctgcaaggtgcgagcgaaatgtgatgggtgaagagcagaatt 34955008  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 363
Target Start/End: Complemental strand, 14410305 - 14410276
Alignment:
Q  334 aaaaacaaaacttgcgtgagttaactcacg 363  Q
    ||||||||||||||||||||||||||||||    
T  14410305 aaaaacaaaacttgcgtgagttaactcacg 14410276  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 540
Target Start/End: Complemental strand, 26092556 - 26092468
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| |||||||||||||||| ||  |||||||| |  | | |||||||  ||||| ||||| ||||||  |||||||||||||    
T  26092556 ttttacacttgcgttagttaactagcgcaagggtattttcgaaatgcctgcagggcgcgagtgttttctgctggaggaagagcagaatt 26092468  T

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Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 402 - 540
Target Start/End: Complemental strand, 46190415 - 46190278
Alignment:
Q  402 tttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggctg 501  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||| ||||| |||||||||  ||| || ||||| |  ||  |||    
T  46190415 tttacacatgcgttacttaagtaacgcagcgttag-taactaacgcatagatttacacttgcgttggttaactagtgcaggggcatttttgacaacactg 46190317  T
Q  502 caggatgcgagcgttttgtgctgggtg-aagagcagaatt 540  Q
    |||| || ||| |||||||| |||||| ||||||||||||    
T  46190316 cagggtg-gagtgttttgtgttgggtgaaagagcagaatt 46190278  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 381 - 514
Target Start/End: Complemental strand, 28539595 - 28539462
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcaca 480  Q
    |||||||||||| | || || ||||||||||||||||||| ||| |||| ||||||||||||||| |||   |||||||| ||||||||| ||||   ||    
T  28539595 gtgagttaactcgcgcagtgctttacacatgcgttacttaagtagcgcaacgttagttaactaacgcattaatttacacttgcgttagtttactaatgca 28539496  T
Q  481 gaggtattttgggtaaggctgcaggatgcgagcg 514  Q
      |||||||| || |||||||||||  |||||||    
T  28539495 tgggtattttaggcaaggctgcagggcgcgagcg 28539462  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 16314016 - 16313965
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  16314016 cgcagcgttagttaactaacgcatagtttttcacttgcgttagttaactagc 16313965  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 32713305 - 32713242
Alignment:
Q  331 tgcaaaaacaaaacttgcgtgagttaactcacgtgcgtgttaaatttagtgtgagttaactcac 394  Q
    |||||||||||||||| ||||||||||||||||   ||||||| ||||| ||||||||||||||    
T  32713305 tgcaaaaacaaaacttacgtgagttaactcacgcaagtgttaattttagcgtgagttaactcac 32713242  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 473
Target Start/End: Complemental strand, 40552823 - 40552734
Alignment:
Q  384 agttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaac 473  Q
    |||||||||||||| ||||||||||||||| || ||| ||  || | ||||||||||||||||||||  ||||||||  || ||||||||    
T  40552823 agttaactcacacagtgttttacacatgcgctagttaagttgcgtaacgttagttaactaacacatatatttacacttacgctagttaac 40552734  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 1181492 - 1181543
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||| ||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  1181492 cgcaacgttagttaactaacgcatagtttttcacttgcgttagttaactagc 1181543  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 477
Target Start/End: Original strand, 7014983 - 7015034
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaactagc 477  Q
    |||||||||||||||||||| | ||||||| |||| ||||||||||||||||    
T  7014983 cgcagcgttagttaactaacgcgtagtttttcacttgcgttagttaactagc 7015034  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 381 - 476
Target Start/End: Original strand, 49000732 - 49000827
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactag 476  Q
    ||||||||||||||||| |||||||||| |||| |  ||| ||  ||||| |||||||||||| | ||||  |||||||| |||| ||||||||||    
T  49000732 gtgagttaactcacacagtgttttacacttgcgctctttaagttgcgcagtgttagttaactagcgcatacatttacacttgcgtgagttaactag 49000827  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 540
Target Start/End: Complemental strand, 45886942 - 45886865
Alignment:
Q  463 cgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||||||||| ||| |||||||| |  | | |||||||  ||||| |||||||||||||||||||||| ||||    
T  45886942 cgttagttaactagcgcaggggtattttcgaaatgtctgcagggcgcgagtgttttgtgctgggtgaagagcaaaatt 45886865  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 514
Target Start/End: Complemental strand, 46090274 - 46090162
Alignment:
Q  401 ttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggct 500  Q
    |||||||| ||||| ||||| || |||| ||||||||||| ||||||||| ||||||||| | ||||||||| || || |  | |||||| || | ||||    
T  46090274 ttttacacgtgcgtgactta-gtcacgctgcgttagttaagtaacacataattttacacttgtgttagttaattaacataaggatatttttgggatggct 46090176  T
Q  501 gcaggatgcgagcg 514  Q
    |||||| |||||||    
T  46090175 gcaggacgcgagcg 46090162  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 540
Target Start/End: Complemental strand, 7013227 - 7013139
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| |||||||||||||||| ||   ||||||| || | | ||||||| ||| || |||||||| | ||||||||||||||||    
T  7013227 ttttacacttgcgttagttaactagcgcatgagtattttcggaatgcctgcagggtgcaagtgttttgtgttaggtgaagagcagaatt 7013139  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 475
Target Start/End: Complemental strand, 28485953 - 28485879
Alignment:
Q  401 ttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||| ||||| ||||| || |||| || |||||||| |||| |||| ||||||||| || |||||||||||    
T  28485953 ttttacacgtgcgtgacttaagtcacgctgcattagttaagtaacgcataattttacacttgcattagttaacta 28485879  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 540
Target Start/End: Original strand, 21485662 - 21485703
Alignment:
Q  499 ctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||  ||||| |||||||||||||||||||||||||||    
T  21485662 ctgcaggtcgcgagtgttttgtgctgggtgaagagcagaatt 21485703  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 508 - 540
Target Start/End: Complemental strand, 3657829 - 3657797
Alignment:
Q  508 gcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    |||||||||||||||||| ||||||||||||||    
T  3657829 gcgagcgttttgtgctggatgaagagcagaatt 3657797  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 426 - 474
Target Start/End: Complemental strand, 30703067 - 30703019
Alignment:
Q  426 cgcagcgttagttaactaacacatagttttacactcgcgttagttaact 474  Q
    |||| |||||||||||||||||||| |||| || | |||||||||||||    
T  30703067 cgcaacgttagttaactaacacataatttttcagttgcgttagttaact 30703019  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 540
Target Start/End: Original strand, 42294562 - 42294650
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| ||| || ||||||| | ||  |||||||| || ||  |||||||  ||||| |||||||| ||||||||||||||||||    
T  42294562 ttttacacttgcgctaattaactaacgcaagggtattttcggcaacactgcagggcgcgagtgttttgtgttgggtgaagagcagaatt 42294650  T

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Target: scaffold0015 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 33542 - 33653
Alignment:
Q  381 gtgagttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcaca 480  Q
    |||||||||||||| || |||||| ||||||||   || | || ||||| ||||||||||||||| ||| |||||||||| |||||||||||||| |  |    
T  33542 gtgagttaactcacgcagtgtttttcacatgcgcatctaaagtgacgcaacgttagttaactaacgcattgttttacacttgcgttagttaactaacgta 33641  T
Q  481 gaggtattttgg 492  Q
    | ||||||||||    
T  33642 ggggtattttgg 33653  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 534
Target Start/End: Original strand, 36237 - 36370
Alignment:
Q  401 ttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagaggtattttgggtaaggct 500  Q
    |||||||| || || ||||| || |||| ||||||||||| |||| |||| ||||||||| |||||||||||||| | ||  || ||||| || | ||||    
T  36237 ttttacacgtgtgtgacttaagtcacgctgcgttagttaagtaacgcataattttacacttgcgttagttaactaacgcaagggcatttttgggatggct 36336  T
Q  501 gcaggatgcgagcgttttgtgctgggtgaagagc 534  Q
    |||||| ||||| |    ||||||||||||||||    
T  36337 gcaggacgcgagtgaaaagtgctgggtgaagagc 36370  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 384 - 493
Target Start/End: Complemental strand, 256548 - 256439
Alignment:
Q  384 agttaactcacacaatgttttacacatgcgttacttacgtaacgcagcgttagttaactaacacatagttttacactcgcgttagttaactagcacagag 483  Q
    |||||||||||  | |||||||||| |||| || ||| ||   | ||||||||||||||||||||||  |||||||| |||||||||||||| | ||  |    
T  256548 agttaactcacgtagtgttttacacttgcgctagttaagttgtgtagcgttagttaactaacacatacatttacacttgcgttagttaactaacgcatgg 256449  T
Q  484 gtattttggg 493  Q
    ||||||||||    
T  256448 gtattttggg 256439  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 540
Target Start/End: Complemental strand, 49204 - 49116
Alignment:
Q  452 ttttacactcgcgttagttaactagcacagaggtattttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||||| |||||| |||||||| ||| ||||||||| || | | |||||||  ||||| ||||||||| ||| |||||||||||||    
T  49204 ttttacacttgcgttaattaactaggacataggtatttttggaatgcctgcagggcgcgagtgttttgtgccgggggaagagcagaatt 49116  T

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Target: scaffold0051 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 486 - 540
Target Start/End: Original strand, 21123 - 21177
Alignment:
Q  486 attttgggtaaggctgcaggatgcgagcgttttgtgctgggtgaagagcagaatt 540  Q
    ||||||| || ||||||||||||||||||   |||||||||||||||||||||||    
T  21123 attttggatatggctgcaggatgcgagcgaaatgtgctgggtgaagagcagaatt 21177  T

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Target: scaffold0010 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 28649 - 28604
Alignment:
Q  430 gcgttagttaactaacacatagttttacactcgcgttagttaacta 475  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  28649 gcgttagttaactaacgcataattttacacttgcgttagttaacta 28604  T

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