View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813-Insertion-6 (Length: 670)
Name: NF4813-Insertion-6
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 375
Target Start/End: Complemental strand, 910951 - 910586
Alignment:
| Q |
8 |
aatcttccaagtagtattagccattactagtgatctggaaaaggttcaataaaataaaatgggaataaaaacataacaatggtcatttagaccataaaga |
107 |
Q |
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| T |
910951 |
aatcttccaagtagtattagccattactagtgatctggaaaaggttcaataaaataaaatgagaataaaaacataacaatggtcatttagaccataaaga |
910852 |
T |
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| Q |
108 |
aatagtaactcgtgatcttcatcatttgctgcaactgcgagatcagagcagaataaactcttatatgtaggatcaagttatagagtagacacatacgatc |
207 |
Q |
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| T |
910851 |
aatagtaactcgtgatcttcatcatttgctgcaactgcgagatcagagcagaataaactcttatatgtaagatcaagttatagagtagagacatacgatc |
910752 |
T |
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| Q |
208 |
tgctcaagaaaaattaaaagcacgttcaaatcattccatgctgcagctgtaagatcataggagactaaaacccatgctaaatggacaaaagctgacgctt |
307 |
Q |
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| T |
910751 |
tgctcaagaaaaaataaaagcacgttcaaatcattccatgctgcagctgtaagatcataggagac--aaacccatgctaaatggacaaaagctgacgctt |
910654 |
T |
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| Q |
308 |
aaactgatttagcgtccggatgaggttaaaatggttgaagctaaagcgtagcgtaagtctaaagctat |
375 |
Q |
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| T |
910653 |
aaactgatttagcgtccggatgaggttaaaatggttgaagctaaaccgcagcgtcagtctaaagctat |
910586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 537 - 656
Target Start/End: Complemental strand, 910483 - 910364
Alignment:
| Q |
537 |
tgactaagatcaaacccaaccaaacaaagactttaatccta-tcttcccggcaaacctacactctacatgttcttccgattaatttggtcagacaagttt |
635 |
Q |
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| T |
910483 |
tgaccaagaccaaacccaaccaaacgaagactttaatccaaatcttcccggcaaacctacactctacatgttcttctgattaaattggtcagacaagttt |
910384 |
T |
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| Q |
636 |
gggggcacaacatatataaaa |
656 |
Q |
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| T |
910383 |
-ggggtacaacatatataaaa |
910364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 463 - 539
Target Start/End: Complemental strand, 910587 - 910511
Alignment:
| Q |
463 |
ataattctgtttgccatattaaaaggaggccctttaatctcctattccctttccgatcgaaaaagcaaaacatttga |
539 |
Q |
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| T |
910587 |
ataattctgtttgccatattaaaaggaggccctttaatctcctattccctttccgatcgaaaaagcaaaacatttga |
910511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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