View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4813-Insertion-9 (Length: 591)

Name: NF4813-Insertion-9
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4813-Insertion-9
NF4813-Insertion-9
[»] chr4 (2 HSPs)
chr4 (7-591)||(21834448-21835040)
chr4 (479-520)||(1600295-1600336)
[»] chr5 (1 HSPs)
chr5 (222-389)||(28524863-28525035)
[»] chr6 (11 HSPs)
chr6 (7-99)||(6595135-6595227)
chr6 (202-350)||(14800791-14800940)
chr6 (478-583)||(6594756-6594861)
chr6 (482-591)||(7994324-7994433)
chr6 (470-591)||(19632275-19632396)
chr6 (470-591)||(6589465-6589586)
chr6 (470-591)||(10579879-10580000)
chr6 (470-591)||(6394700-6394821)
chr6 (470-555)||(6423053-6423138)
chr6 (16-93)||(6597294-6597371)
chr6 (475-511)||(6597120-6597156)
[»] chr3 (2 HSPs)
chr3 (345-387)||(46926701-46926743)
chr3 (411-440)||(51764737-51764766)
[»] chr7 (2 HSPs)
chr7 (470-590)||(15092294-15092414)
chr7 (411-440)||(10614398-10614427)


Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 7 - 591
Target Start/End: Complemental strand, 21835040 - 21834448
Alignment:
Q  7 aattccaacaacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacagataagattcataaactacaaaagatggtgtcta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21835040 aattccaacaacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacagatgagattcataaactacaaaagatggtgtcta 21834941  T
Q  107 gcaatcgttcactgagagggtttgaagggcatggtcttgcacagctgaatgatgtttaaggttaatttgaagggcgttgaattcgtgtagtagcgtttga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834940 gcaatcgttcactgagagggtttgaagggcatggtcttgcacagctgaatgatgtttaaggttaatttgaagggcgttgaattcgtgtagtagcgtttga 21834841  T
Q  207 atttaaaatgatggatgaagtaatgtttgagagtacaacaaaggtggaagcggcgttttgagtacaaaaatggtggaggtggtatttgagagtacaacga 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  21834840 atttaaaatgatggatgaagtaatgtttgagagtacagcaaaggtggaagcggcgttttgagtacaaaaatggtggaggtgctatttgggagtacaacga 21834741  T
Q  307 tgg---------taaaaataaagctaaaactatgtacacacacatttaacaacacgacattcaaccgcttgcattacattgtacattatatatactttgg 397  Q
    |||          ||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834740 tggataaaaaaaaaaaaaaaaacataaaactatgaacacacacatttaacaacacgacattcaaccgcttgcattacattgtacattatatatactttgg 21834641  T
Q  398 aaattatcaagcaatgagtaaatgcacatttgtaagttgacataaaatcttaaaacaaaaactacttacaggatactagcaaagaaggcatccacgacgc 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21834640 aaattatcaagcaatgagtaaatgcacatttgtaagttgacataaaatcttaaaacaaaaac-acttacaggatactagcaaagaaggcatccacgacgc 21834542  T
Q  498 gagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgtttcactccct 591  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||    
T  21834541 gagaagaatttcctcttttcgtcacttaaatgcaaatcccccaaattaatttctctcagttgtgtacatctttctaccatatgtttcattccct 21834448  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 520
Target Start/End: Original strand, 1600295 - 1600336
Alignment:
Q  479 aagaaggcatccacgacgcgagaagaatttcctcttttcgtc 520  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  1600295 aagaaggcatccatgactcgagaagaatttcctattttcgtc 1600336  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 222 - 389
Target Start/End: Original strand, 28524863 - 28525035
Alignment:
Q  222 tgaagtaatgtttgagagtacaacaaaggtggaagcggcgtttt-gagtacaaaaatggtggaggtggtatttgagagtacaacgatggtaaaaataaag 320  Q
    |||||||| |||| |||||||||| | |||||| || || |||  || |||||| |||||||||||||  |||||| |||||||||||||||||||||      
T  28524863 tgaagtaacgtttcagagtacaacgatggtggaggcagcatttgagaatacaaagatggtggaggtggcgtttgagggtacaacgatggtaaaaataata 28524962  T
Q  321 ctaaaactatgt----acacacacatttaacaacacgacattcaaccgcttgcattacattgtacattatata 389  Q
     |||||||||||    | ||||||||||||||| ||  || ||||| ||||||||| ||||| ||||||||||    
T  28524963 gtaaaactatgtccacatacacacatttaacaaaacttcactcaactgcttgcattgcattgcacattatata 28525035  T

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Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 6595227 - 6595135
Alignment:
Q  7 aattccaacaacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacagataagattcataaactacaaaagatg 99  Q
    ||||||||||||||||||||||| ||| | |||| |||||| |||||||||||||||||||| | | || |||||||||  ||||||||||||    
T  6595227 aattccaacaacaacaaacaaataaaaaaataatgacaaattgaaccagaattgctagtgaaaagacatgagattcatactctacaaaagatg 6595135  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 350
Target Start/End: Original strand, 14800791 - 14800940
Alignment:
Q  202 tttgaatttaaaatgatggatgaagtaatgtttgagagtacaacaaaggtggaagcggcgtttt-gagtacaaaaatggtggaggtggtatttgagagta 300  Q
    ||||||| || || ||||| |||||||| ||||||||| |||| || |||||| | | | |||  ||||||||| |||||||||||||  |||||| |||    
T  14800791 tttgaatgtacaacgatggttgaagtaacgtttgagagcacaataatggtggaggagacatttgagagtacaaagatggtggaggtggagtttgagggta 14800890  T
Q  301 caacgatggtaaaaataaagctaaaactatgtacacacacatttaacaac 350  Q
    ||| |  ||||| ||| || ||||  ||||||||||||||||||||||||    
T  14800891 caatggcggtaacaatgaaactaatgctatgtacacacacatttaacaac 14800940  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 583
Target Start/End: Complemental strand, 6594861 - 6594756
Alignment:
Q  478 aaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccat 577  Q
    ||||||||||||| ||||||||||||| || |||  ||||||| ||||||||  || ||| |||||  |||||||||| | |||| || ||||||||||     
T  6594861 aaagaaggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccac 6594762  T
Q  578 atgttt 583  Q
    ||||||    
T  6594761 atgttt 6594756  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 482 - 591
Target Start/End: Complemental strand, 7994433 - 7994324
Alignment:
Q  482 aaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgt 581  Q
    |||||||||  |||||||||||| || ||| |||| ||| |||| ||| |||||||| |||| ||| ||| ||||| | || || |||||||||| ||||    
T  7994433 aaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgt 7994334  T
Q  582 ttcactccct 591  Q
    ||||||||||    
T  7994333 ttcactccct 7994324  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 591
Target Start/End: Original strand, 19632275 - 19632396
Alignment:
Q  470 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 569  Q
    |||||||||||||||||||||| ||||| || ||| ||||||  ||| ||| ||| |||| | ||||||||||| ||| ||  ||||| || | || |||    
T  19632275 atactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtcacttgaatgaatatcccccaaataaatctccttcagttgtttgcagttt 19632374  T
Q  570 tctaccatatgtttcactccct 591  Q
    |||||||  |||||||||||||    
T  19632375 tctaccacgtgtttcactccct 19632396  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 591
Target Start/End: Complemental strand, 6589586 - 6589465
Alignment:
Q  470 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 569  Q
    ||||||| ||||| |||||||| || | ||||||| || |||  ||| ||| |||||||| | |||||||| || ||| |||   |||||||| || |||    
T  6589586 atactagtaaagatggcatccatgatgggagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttt 6589487  T
Q  570 tctaccatatgtttcactccct 591  Q
    ||||||| ||||||||||||||    
T  6589486 tctaccacatgtttcactccct 6589465  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 591
Target Start/End: Complemental strand, 10580000 - 10579879
Alignment:
Q  470 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttt-tcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacattt 568  Q
    |||||||||||||||||||||| ||||| ||||||||  ||| ||| || || |||||||  |||||  |||| | ||| ||||| ||| |||| || ||    
T  10580000 atactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc-cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagtt 10579902  T
Q  569 ttctaccatatgtttcactccct 591  Q
    |||||||| |||||| |||||||    
T  10579901 ttctaccacatgtttaactccct 10579879  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 591
Target Start/End: Original strand, 6394700 - 6394821
Alignment:
Q  470 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 569  Q
    ||||||||||| | |||||||||||||| | |  | || ||| |||||||| |||| ||  | ||||||||||| ||| ||||||| | |||| || |||    
T  6394700 atactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 6394799  T
Q  570 tctaccatatgtttcactccct 591  Q
    ||||||| ||||| ||| ||||    
T  6394800 tctaccacatgttccacaccct 6394821  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 555
Target Start/End: Original strand, 6423053 - 6423138
Alignment:
Q  470 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctca 555  Q
    |||||||||||||||||||||||||  | ||| || |||| | |||| ||| |||| ||| ||||| ||||||| ||| |||||||    
T  6423053 atactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttacatgaaaatctcccaaataaatctctctca 6423138  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 6597371 - 6597294
Alignment:
Q  16 aacaacaaacaaatgaaacagtaataacaaatcgaaccagaattgctagtgaagacagataagattcataaactacaa 93  Q
    ||||| |||||||||||||||| || |||||| |||||||| ||| ||||||| | | || ||| ||||| |||||||    
T  6597371 aacaaaaaacaaatgaaacagtgatgacaaattgaaccagagttggtagtgaaaagacatgagaatcatacactacaa 6597294  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 6597156 - 6597120
Alignment:
Q  475 agcaaagaaggcatccacgacgcgagaagaatttcct 511  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6597156 agcaaagaaggcatccatgacgcaagaagaatttcct 6597120  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 46926701 - 46926743
Alignment:
Q  345 aacaacacgacattcaaccgcttgcattacattgtacattata 387  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46926701 aacaacacgacattcaaccgcttgcattacattgtacattata 46926743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Complemental strand, 51764766 - 51764737
Alignment:
Q  411 atgagtaaatgcacatttgtaagttgacat 440  Q
    ||||||||||||||||||||||||||||||    
T  51764766 atgagtaaatgcacatttgtaagttgacat 51764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 590
Target Start/End: Complemental strand, 15092414 - 15092294
Alignment:
Q  470 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 569  Q
    ||||||||||| | ||||||||||||||||||| | ||||||  ||| ||| |||| ||| | || || ||||| ||| ||||||| | |||| || |||    
T  15092414 atactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttt 15092315  T
Q  570 tctaccatatgtttcactccc 590  Q
    |||| || |||||||||||||    
T  15092314 tctagcacatgtttcactccc 15092294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Original strand, 10614398 - 10614427
Alignment:
Q  411 atgagtaaatgcacatttgtaagttgacat 440  Q
    ||||||||||||||||||||||||||||||    
T  10614398 atgagtaaatgcacatttgtaagttgacat 10614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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