View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_high_14 (Length: 283)
Name: NF4813_high_14
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 30559809 - 30559549
Alignment:
| Q |
19 |
tgtttcccttgaaggaaggtgttttgtttcatcttttatagttgcatcattcgaatccatgactgcctacaaaagcatctgattcacaataaattacagt |
118 |
Q |
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| T |
30559809 |
tgtttcccctgatggaaggtgttttgtttcatcttccatagttgcattgttcgaatccatgactacttacaaaagcacctgattcacaataaatgacagt |
30559710 |
T |
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| Q |
119 |
tttcagctattatgatgtaatgaaacaaatcttttgtatcatatgtaaccataagtccataacctaaacaagtag-tttaagctcaagttattaatgata |
217 |
Q |
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| T |
30559709 |
gttcagctactctgttgtaatgaaacaaatctattgtatcatatgtaaccataagtccataacctaaacaagtagttttaagttcaagtgattaatgata |
30559610 |
T |
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| Q |
218 |
tttagttaatgatgaatgaatcgaaagaaacacgagttcggatccttgctagaataatcta |
278 |
Q |
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| T |
30559609 |
tttagttaatgacggattgtttgaaagaaacacgagttcggatccttgttagaacaatcta |
30559549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 30551015 - 30550932
Alignment:
| Q |
145 |
aaatcttttgtatcatatgtaaccataagtccataacctaaacaagtagtttaagctcaagttattaatgatatttagttaatga |
229 |
Q |
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| T |
30551015 |
aaatctatcgtatcatatgtaactataagtccataacttaagcacat-ggttcagctcaaatgattaatgagatttagttaatga |
30550932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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