View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_high_19 (Length: 239)
Name: NF4813_high_19
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_high_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 4179934 - 4179707
Alignment:
| Q |
17 |
catttattaaggaatttttggttgaccaaaacctctgccaagaggaggctacaactaatgccgattgagtatcctccacatttgaagtttgtcacctgaa |
116 |
Q |
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| T |
4179934 |
catttattaaggaatttttggtttaccaaaacctctgccaagaggaggctacaacaaatgccgattgagtatcctccacatttgaagtttgtcacctgaa |
4179835 |
T |
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| Q |
117 |
gnnnnnnnccacatctacaaattaaattgtatatctgatcaaactcaaattcattaaca-----gatacattggacccagtataatcgactttatggtgc |
211 |
Q |
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| T |
4179834 |
gaaaaaaaccacatctacaaattaaattgtatatctgatcaaactcaaattcattaacaggtacgatacattggacccagtataatcaactttatggtgc |
4179735 |
T |
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| Q |
212 |
gggtcggttgtagaccattagattaaga |
239 |
Q |
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| T |
4179734 |
gggtcggttgtagaccattagattaaga |
4179707 |
T |
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