View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_high_21 (Length: 230)
Name: NF4813_high_21
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 1247467 - 1247676
Alignment:
| Q |
1 |
gagaagaacccttaacattcacaatgccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcaccgatccaagaag |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
1247467 |
gagaagaacccttaacattcacaatcccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcactgacccaagaag |
1247566 |
T |
|
| Q |
101 |
cgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagtttggattctcaagacctgattttcgacaaagttctctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1247567 |
cgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttgctgatgttgagtttggattctcaagacctgattttcggcaaagttctctt |
1247666 |
T |
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| Q |
201 |
gttggtactg |
210 |
Q |
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|||||||||| |
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| T |
1247667 |
gttggtactg |
1247676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 42014239 - 42014448
Alignment:
| Q |
1 |
gagaagaacccttaacattcacaatgccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcaccgatccaagaag |
100 |
Q |
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|||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42014239 |
gagaagaatctttaacattcacaatcccatcatcttcctctcattcctcaccgatcaccgtctctgacacactcgatagttacctcaccgacccaagaag |
42014338 |
T |
|
| Q |
101 |
cgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagtttggattctcaagacctgattttcgacaaagttctctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014339 |
cgcttctggaagtttccagaacgatggtgttctttcatctggtgatgttgccgatgttgagtttggattctcaagacctgattttcgacaaagttctctt |
42014438 |
T |
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| Q |
201 |
gttggtactg |
210 |
Q |
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|||||||||| |
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| T |
42014439 |
gttggtactg |
42014448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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