View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_high_25 (Length: 210)
Name: NF4813_high_25
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_high_25 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 6308095 - 6308297
Alignment:
| Q |
1 |
tacctgccccacatttaccctttgatttccattagaggccaggctgactttattatcaactaaatcacaagaaaccattaccggttatgcatacctcact |
100 |
Q |
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| T |
6308095 |
tacctgccccacatttaccctttgatttccattagaggccaggctgactttattatcaa-taaatcacaaaaaaccattaccggttatgcatacctcact |
6308193 |
T |
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| Q |
101 |
cttatttcctttcactctaatac--ctcatcttttaatatgatttaagtcccttaaattcaattgaccgccttgattccatactatgacttgaatagaat |
198 |
Q |
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| T |
6308194 |
cttatttcctttcactctaatacacctcctcttttaatatgatttaagtcccttaaattcaattgattgccttgattccatactatgacttgaatagaaa |
6308293 |
T |
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| Q |
199 |
aatc |
202 |
Q |
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|||| |
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| T |
6308294 |
aatc |
6308297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 107375 - 107529
Alignment:
| Q |
47 |
actttattatcaactaaatcacaagaaaccattaccggttatgcatacctcactcttatttcctttcactctaatacctcatcttttaatatga-tttaa |
145 |
Q |
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|||||||| |||| ||||||||||||| |||||| ||||| ||||||||||||| ||||||| |||||||||||||||||| || ||||||||| ||||| |
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| T |
107375 |
actttattctcaa-taaatcacaagaagccattagcggttgtgcatacctcacttttatttcttttcactctaatacctca-ctcttaatatgattttaa |
107472 |
T |
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| Q |
146 |
gtcccttaaattcaattgaccgccttgattccatactatgacttgaatagaataatc |
202 |
Q |
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| T |
107473 |
gtcccttaaaatcaattgattgccttgattccatactataacttgaatagaaaaatc |
107529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 29451237 - 29451348
Alignment:
| Q |
92 |
tacctcactcttatttcctttcactctaatacctcatcttttaatatga-tttaagtcccttaaattcaattgaccgccttgattccatactatgacttg |
190 |
Q |
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|||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | |||||||||||||| | |
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| T |
29451237 |
taccccacttttattccctttcactctaatacctcatcttttaatatgattttaagtcccttaaaatcaattggttgccttaactccatactatgactgg |
29451336 |
T |
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| Q |
191 |
aatagaataatc |
202 |
Q |
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| T |
29451337 |
aatagaagaatc |
29451348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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