View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_high_7 (Length: 421)
Name: NF4813_high_7
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 52542831 - 52543214
Alignment:
| Q |
16 |
aacctgtgcaccagttgcatcccctttaataaccgtcggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
115 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52542831 |
aacctgtgcaccagttgcatcccctttaataactgttggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
52542930 |
T |
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| Q |
116 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagttccatcaaactctttagcagctgaatccaaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52542931 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagttccatcaaactctttagcagctgaatccaaca |
52543030 |
T |
|
| Q |
216 |
gttgagtcacagattcagcataaaccctagtcctgggccccacctccctgttatcaagctccccaactgcaaatgcaaaaaggtaaggtggaattggaag |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52543031 |
gttgagtcacagcttcagcataaaccctagtcctgggccccacctccctgttatcaagctccccaactgcaaatgcaaaaaggtaaggtggaattggaag |
52543130 |
T |
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| Q |
316 |
ttccatctcaaactcttccaccactctaccttgccaagaattcccaaaacactcgtcgtcaaccaatgattcgcggcgcgccac |
399 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52543131 |
ttccatctcaaactcttccaccactctacctttggacgaattcccaaaacactcgtcgtcaaccaatgattcgcggagcgccac |
52543214 |
T |
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