View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_low_11 (Length: 326)
Name: NF4813_low_11
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 576661 - 576344
Alignment:
| Q |
1 |
tcggaacaacccgaaattcctttcacatattggaccaggctttagattttcatcaaacaaagcaaaaatatacgtctcaaaagtccggtttggcatgaga |
100 |
Q |
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| T |
576661 |
tcggaacaacccaaaattcctttcacatattggaccgggctttagattttcatcaaacaaagcaaaaatatatgtctcaaaagtccggtttggcatgaga |
576562 |
T |
|
| Q |
101 |
ggtgttccaacgccagaagtaacatgtcttataagattcccattatagtcagaagcactgtttggatcaacaccaatttgggccaagtcgcctatcgaag |
200 |
Q |
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| T |
576561 |
ggtgttccaaccccagaagtaacatgtcttataagattcccattatagtcagaagcactgttcccatcgacaccaatttgggccgagtcgcctatcgtag |
576462 |
T |
|
| Q |
201 |
gccaacccgtttcgccaatagcaatctcaacattctcaaagcccaaaactttcatagctgaataaacagcatcaagttgtgcatcaaacatattagtgta |
300 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
576461 |
gccaacccgtttcgccaataacaatctcaacatcctcaaagcccaaaactttcatagctgaataaacagcatcaagttgtgcatcaaacatattagtgta |
576362 |
T |
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| Q |
301 |
atgtaatttagtattatc |
318 |
Q |
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|||||||||||||||||| |
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| T |
576361 |
atgtaatttagtattatc |
576344 |
T |
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