View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4813_low_14 (Length: 291)

Name: NF4813_low_14
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4813_low_14
NF4813_low_14
[»] chr1 (6 HSPs)
chr1 (56-211)||(3418124-3418279)
chr1 (208-273)||(3417748-3417813)
chr1 (1-36)||(3418295-3418330)
chr1 (220-272)||(7844541-7844593)
chr1 (224-262)||(26531498-26531536)
chr1 (220-272)||(45919405-45919456)
[»] chr5 (1 HSPs)
chr5 (220-272)||(27594491-27594543)
[»] chr2 (3 HSPs)
chr2 (220-272)||(24968057-24968109)
chr2 (220-272)||(6912413-6912465)
chr2 (220-272)||(31967024-31967075)
[»] chr6 (1 HSPs)
chr6 (217-273)||(15600219-15600273)
[»] chr8 (3 HSPs)
chr8 (220-272)||(45245086-45245138)
chr8 (226-272)||(40885873-40885919)
chr8 (220-272)||(19263280-19263332)
[»] chr4 (4 HSPs)
chr4 (220-272)||(22681141-22681193)
chr4 (220-272)||(17675209-17675261)
chr4 (225-269)||(50159143-50159187)
chr4 (220-272)||(56340380-56340432)
[»] chr3 (2 HSPs)
chr3 (220-272)||(39183167-39183219)
chr3 (220-272)||(40056628-40056680)
[»] chr7 (1 HSPs)
chr7 (220-262)||(36838032-36838074)
[»] scaffold1743 (1 HSPs)
scaffold1743 (220-272)||(164-216)
[»] scaffold1315 (1 HSPs)
scaffold1315 (227-267)||(1372-1412)
[»] scaffold1293 (1 HSPs)
scaffold1293 (227-267)||(659-699)
[»] scaffold0284 (1 HSPs)
scaffold0284 (220-272)||(2023-2074)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 3418279 - 3418124
Alignment:
Q  56 ccataagataatcatcatcggttgaatattgtcatgtcttaattgaagtcaaaaacactttgtcgaaattatattatattagtatggacacccgtgctaa 155  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  3418279 ccataggataatcattatcggttgaatattatcatgtcttaattgaagtcaaaaacactctgtcggaattatattatattagtatggacacccgtgctaa 3418180  T
Q  156 gcaagggctacatttcagtcaaattttggagagaaaatgttgtaatgtatcaaatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3418179 gcaagggctacatttcagtcaaattttggagagaaaatgttgtaatgtatcaaatg 3418124  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 3417813 - 3417748
Alignment:
Q  208 aatgaatcgagatttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaaa 273  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3417813 aatgaattgagatttagggtgaagatgtggtgttaatatcacttatgtggtttcttttagtctaaa 3417748  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3418330 - 3418295
Alignment:
Q  1 tgccaacaaataaaaagtatttatcattatgtctcg 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  3418330 tgccaacaaataaaaagtatttatcattatgtctcg 3418295  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 7844593 - 7844541
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    ||||| ||||||||||||||||||  |||||| |||||||||||||| |||||    
T  7844593 tttagagtgaagatgtggtgtcaaactcacttgtgtggtttcttttaatctaa 7844541  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 26531536 - 26531498
Alignment:
Q  224 gggtgaagatgtggtgtcaatatcacttatgtggtttct 262  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  26531536 gggtgaagatgtggtgtcgatatcacttttgtggtttct 26531498  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 45919456 - 45919405
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||||||||||||||||||||| | ||||||| | |||||||||||| |||||    
T  45919456 tttagggtgaagatgtggtgtcta-atcacttgtttggtttcttttaatctaa 45919405  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 27594543 - 27594491
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  27594543 tttaaggtgaagatgtggtgtcaaaatcacttgtgtggtttcttttaatctaa 27594491  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 24968057 - 24968109
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  24968057 tttagggtgaagatgtggtgtcaaactcacttgtgtggtttcttttaatctaa 24968109  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 6912413 - 6912465
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    ||||||||||| |||||||||||| ||||||| ||| | |||| |||||||||    
T  6912413 tttagggtgaaaatgtggtgtcaaaatcacttgtgttgattctcttagtctaa 6912465  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 31967075 - 31967024
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||||||||||||||||||||| | ||||||| | |||||||||||| |||||    
T  31967075 tttagggtgaagatgtggtgtcta-atcacttgtttggtttcttttaatctaa 31967024  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 15600273 - 15600219
Alignment:
Q  217 agatttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaaa 273  Q
    ||||||||| |||| ||||| |||||||||||  |||||||||||||||||||||||    
T  15600273 agatttaggctgaatatgtgatgtcaatatca--tatgtggtttcttttagtctaaa 15600219  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 45245086 - 45245138
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||| |||||||||||||||||||  |||||| |||||||||||||| |||||    
T  45245086 tttaaggtgaagatgtggtgtcaaactcacttgtgtggtttcttttaatctaa 45245138  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 40885873 - 40885919
Alignment:
Q  226 gtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    ||||||||||||||||||  |||||| |||||||||||||| |||||    
T  40885873 gtgaagatgtggtgtcaaactcacttgtgtggtttcttttaatctaa 40885919  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 19263332 - 19263280
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||||| || ||||||||||||||| |||||| |||||| ||| |||||||||    
T  19263332 tttaggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaa 19263280  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 22681193 - 22681141
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    ||||||||| ||||||||||||||| |||||| |||||| ||| |||||||||    
T  22681193 tttagggtggagatgtggtgtcaatctcacttttgtggtatctgttagtctaa 22681141  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 17675261 - 17675209
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    ||||||||||||||||||||||||  |||||| |||| ||| ||||| |||||    
T  17675261 tttagggtgaagatgtggtgtcaaactcacttgtgtgattttttttaatctaa 17675209  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 50159143 - 50159187
Alignment:
Q  225 ggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtc 269  Q
    |||||||||||||||||||| | ||||||| ||||||| ||||||    
T  50159143 ggtgaagatgtggtgtcaatcttacttatgaggtttctcttagtc 50159187  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 56340380 - 56340432
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    ||||||||||||||||||||| ||   ||||| |||||||||||||| |||||    
T  56340380 tttagggtgaagatgtggtgtaaaacccacttgtgtggtttcttttaatctaa 56340432  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 39183167 - 39183219
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||||||||||||||||||| |||  |||||| |||||||||||||| |||||    
T  39183167 tttagggtgaagatgtggtgccaaactcacttgtgtggtttcttttaatctaa 39183219  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 40056628 - 40056680
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||| |||||||||||||||||||  |||||| |||||||||||||| |||||    
T  40056628 tttatggtgaagatgtggtgtcaaactcacttgtgtggtttcttttaatctaa 40056680  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 36838074 - 36838032
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttct 262  Q
    |||| |||||||| ||||||||||||||| |||||||||||||    
T  36838074 tttaaggtgaagacgtggtgtcaatatcatttatgtggtttct 36838032  T

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Target: scaffold1743 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 216 - 164
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||||| || ||||||||||||||| |||||| |||||| ||| |||||||||    
T  216 tttaggatggagatgtggtgtcaatctcacttttgtggtatctgttagtctaa 164  T

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Target: scaffold1315 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 1372 - 1412
Alignment:
Q  227 tgaagatgtggtgtcaatatcacttatgtggtttcttttag 267  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  1372 tgaagatgtggtgtcaatctcacttatggggtttctcttag 1412  T

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Target: scaffold1293 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 699 - 659
Alignment:
Q  227 tgaagatgtggtgtcaatatcacttatgtggtttcttttag 267  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  699 tgaagatgtggtgtcaatctcacttatggggtttctcttag 659  T

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Target: scaffold0284 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 2074 - 2023
Alignment:
Q  220 tttagggtgaagatgtggtgtcaatatcacttatgtggtttcttttagtctaa 272  Q
    |||||||||||||||||||||| | ||||||| | |||||||||||| |||||    
T  2074 tttagggtgaagatgtggtgtcta-atcacttgtttggtttcttttaatctaa 2023  T

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