View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_low_18 (Length: 245)
Name: NF4813_low_18
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_low_18 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 13395793 - 13396017
Alignment:
| Q |
17 |
agtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggtacgaa |
116 |
Q |
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| T |
13395793 |
agtggacctaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggtacgaa |
13395892 |
T |
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| Q |
117 |
tggaacaagtaagatgagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcttgatgtttatttggaagctgagaagcaatttc |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
13395893 |
tggaacaagtaagaagagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcatgatgttgatttggaagctgagaagcaatttc |
13395992 |
T |
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| Q |
217 |
agacgcagacaaactagaatgttca |
241 |
Q |
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||| ||||| ||||||||||||||| |
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| T |
13395993 |
agaagcagaaaaactagaatgttca |
13396017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 13407398 - 13407630
Alignment:
| Q |
13 |
tgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggta |
112 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || |
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| T |
13407398 |
tgagagtggacgtaaagagcctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctttgttaccatcttcattgata |
13407497 |
T |
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| Q |
113 |
cgaatggaacaagtaagatgagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcttgatgtttatttggaagctgagaagcaa |
212 |
Q |
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| T |
13407498 |
cgaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgttgatttggaagctcagaagcaa |
13407597 |
T |
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| Q |
213 |
tttcagacgcagacaaactagaatgttcacttg |
245 |
Q |
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| T |
13407598 |
tttcagaagcagaaaaactagaatgttcacttg |
13407630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 13384835 - 13385063
Alignment:
| Q |
13 |
tgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggta |
112 |
Q |
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| T |
13384835 |
tgagagtggagccaaagagcctccatcactatcacatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccatcttcattggta |
13384934 |
T |
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| Q |
113 |
cgaatggaacaagtaagatgagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcttgatgtttatttggaagctgagaagcaa |
212 |
Q |
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|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||| |
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| T |
13384935 |
cgaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgttgatttggaagctcagaagcaa |
13385034 |
T |
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| Q |
213 |
tttcagacgcagacaaactagaatgttca |
241 |
Q |
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| T |
13385035 |
tttcataagcagaaaaactagaatgttca |
13385063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 19174344 - 19174112
Alignment:
| Q |
13 |
tgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttaccattttcattggta |
112 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || |
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| T |
19174344 |
tgagagtggacctaaagagcctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctttgttaccatcttcattgcta |
19174245 |
T |
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| Q |
113 |
cgaatggaacaagtaagatgagagtaactagccaatacagtcaacatacgttcaagcctctcagccaattcttgatgtttatttggaagctgagaagcaa |
212 |
Q |
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|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||| |
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| T |
19174244 |
cgaatggaacaagtgagaagagagtaactagccaacacagtcaacatacgttcaagcctctcagccaattcagggtgttgatttggaagctcagaagcaa |
19174145 |
T |
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| Q |
213 |
tttcagacgcagacaaactagaatgttcacttg |
245 |
Q |
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||||||| ||||| || |||||| |||||||| |
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| T |
19174144 |
tttcagaagcagaaaaggtagaatattcacttg |
19174112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 73
Target Start/End: Original strand, 70086 - 70117
Alignment:
| Q |
42 |
tatccaatgcaaagtattgaccaattgatgag |
73 |
Q |
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| T |
70086 |
tatccaatgcaaagtattgaccaattgatgag |
70117 |
T |
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