View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_low_3 (Length: 556)
Name: NF4813_low_3
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 9 - 540
Target Start/End: Complemental strand, 39562648 - 39562117
Alignment:
| Q |
9 |
catcatcatgaattgggtatgcagtcacactgtaatatgtattaggcatatgttacccatgaaaaagattgctacatgttaaaaatataggtattatggt |
108 |
Q |
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| T |
39562648 |
catcatcttgaattgggtatgcagtcacactgtaatatgtattaggcatatgttacccatgaaaaagattgctacatgttaaaaatataggtattatggt |
39562549 |
T |
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| Q |
109 |
aagtttgagaaaatgggacaaaccctgttgtcggtgacacaatgatatcagcctcggaaaatattttcttgtgaaactgcaattggcgattcctgtgttc |
208 |
Q |
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| T |
39562548 |
aagtttgagaaaatgggacaaaccctgttgtcggtgacacaatgatatcagcctcggaaaatattttcttgtgaaactgcaattggcgattcctgtgttc |
39562449 |
T |
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| Q |
209 |
ataaaacatataaccatgagtcgattattaaggtttaataataaaagaaaaacctaaagtcacatgattaattaaaaacaaatttatgttttttaatctc |
308 |
Q |
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| T |
39562448 |
ataaaacatataaccatgagtcgattattaaggtttaataataaaagaaaaacctaaagtcacatgattaattaaaaacaaatttatgttttttaatctc |
39562349 |
T |
|
| Q |
309 |
tatctttcatataagatgtgatagttaatattaagtaataactcatctgaactagtcctttcactttatacattttgtatgtgtgtctgtaggtatagaa |
408 |
Q |
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| T |
39562348 |
tatctttcatataagatgtgatagttaatattaagtaataactcatctgaactagtcctttcactttatacattttgtatgtgtgtctgtaggtatagaa |
39562249 |
T |
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| Q |
409 |
tattgagtaaagggaagagtgcaggtttaaaattgtctagtaggtgagaaaactttatcactgttttcttttactcttgattcatgttattgaatttaac |
508 |
Q |
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| T |
39562248 |
tattgagtaaagggaagagtgcaggtttaaaattgtctagtaggtgagaaaactttatcactgttttcttttactcttgattcatgttattgaatttaac |
39562149 |
T |
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| Q |
509 |
ataaattttctgaactccttggtctaattttt |
540 |
Q |
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| T |
39562148 |
ataaattttctgaactccttggtctaattttt |
39562117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 44423282 - 44423207
Alignment:
| Q |
129 |
aaccctgttgtcggtgacacaatgatatcagcctcggaaaatattttcttgtgaaactgcaattggcgattcctgt |
204 |
Q |
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| T |
44423282 |
aaccctgttgttggtgaaacaatgacatccgcttcggaaaatatcttcttgtgaaactgcaattggcgattcctgt |
44423207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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