View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_low_4 (Length: 533)
Name: NF4813_low_4
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 7 - 516
Target Start/End: Original strand, 41988278 - 41988802
Alignment:
| Q |
7 |
tagataatactgttaaatgactgccatatacgtaggaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctg |
106 |
Q |
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| T |
41988278 |
tagataatactgttaaatgactgccatatacgtaagaattttgataataaagagaatactgtttaatgtgctgaaaagataagaaaaagccttgagtctg |
41988377 |
T |
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| Q |
107 |
atggagatgtaactggaatcttttgaccgcacgtgtaaatctcctttatgaaagatatgttatgaaa-------------gatcgaaatcttgacaataa |
193 |
Q |
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| T |
41988378 |
atggagatgtaactggaatcttttgaccgcacgtgtaaatctcctttatgaaagatatgttatgagaaggtgtgttgaatgatcgaaatcttgacaataa |
41988477 |
T |
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| Q |
194 |
catgacattatcttagtatgacactcttttttgtttattgtttt-tcttgacagctgtgatctctatagagcatgaaaagacattgtaacttcttacttt |
292 |
Q |
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| T |
41988478 |
catgacattatcttagtatgacactcttttttgtttattgttttttcttgacagctgtgatccctatagagcatgaaaagacattgtaacttcttacttt |
41988577 |
T |
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| Q |
293 |
gatttttgtatttcatttgattgagtgaaagacattgtaactacatgagaaataagatcctactccggatcttcagaaattttgagtaatttcatgacca |
392 |
Q |
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| T |
41988578 |
gatttttgtatttcatttgattgagtgaaagacattgtaactacatgagaaataagatcctactccggatcttcggaagttttgagtaatttcatgacca |
41988677 |
T |
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| Q |
393 |
tgagtgaggaatgtagacaaattatttgtggccaagtgttgattagattaccaaatttatatttttctgaatggttaaggttactc-atgctattgctaa |
491 |
Q |
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| T |
41988678 |
tgagtgaggaatgtagacaaattatttgtggccaagtattgattagattacctaatttatatttttctgaatggttaaggttactcaatgctattgctaa |
41988777 |
T |
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| Q |
492 |
ctactagatttgaggcaataattat |
516 |
Q |
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| T |
41988778 |
ctactagatttgaggcaataattat |
41988802 |
T |
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