View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_low_8 (Length: 414)
Name: NF4813_low_8
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 31465490 - 31465103
Alignment:
| Q |
11 |
catcatcaacatcgtctgcaatgatgaataccatggtggcatcaaataaaccaccccaacaacatcgtagcccggttataatctacacacattctccacg |
110 |
Q |
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| T |
31465490 |
catcatcaacatcgtctgcaatgatgaataccatggtggcatcaaataaaccaccccaacaacatcgtagcccggttataatctacacacattctccacg |
31465391 |
T |
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| Q |
111 |
tgttattcatactcagcctaaagatttcatggcattggtgcaaaagcttaccgggctctctcgctcggaggaggacgacgggagcaaaaatggcaaaaat |
210 |
Q |
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| T |
31465390 |
tgttatacatactcagcctaaagatttcatggcattggtgcaaaagcttaccgggctctctcgctcggaggaggacgacgggagcaaaaatggcaaaaat |
31465291 |
T |
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| Q |
211 |
gcctcgtcatctcaatatcagaccccgaagaaggagcctgtgagctgcaactacgggatgttgatcggagacaaagagaatgatcgaaaaaatgttgttt |
310 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31465290 |
gcctcgtcgtctcaatatcagaccccgaagaaggagcctgtgagctgcaactatgggatgttgatcggagacaaagagaatgatcgaaaaaatgttgttt |
31465191 |
T |
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| Q |
311 |
tgcttagaaatgaggacagcgacacatcctcatcagtgatcaccgatgagaataattatggtaacaacgttggtgaaaatcaagttaa |
398 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
31465190 |
tgcttagaaatgaggacaatgacacatcctcatcggtgatcaccgatgagaataattatggtaacaacgtcggtgaaaatcaggttaa |
31465103 |
T |
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