View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4813_low_9 (Length: 355)
Name: NF4813_low_9
Description: NF4813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4813_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 10013779 - 10014087
Alignment:
| Q |
1 |
acattagttttatatgtgagttagagttatagaatacaaagttttgtttaaatactacaattcaatttacaagtttacccctgaatcgctccgctaaact |
100 |
Q |
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| T |
10013779 |
acattagttttatatgtgagttagagttatagaatacaaagttttgtttaaatactacaattcaatttacaagtttacccctgaatcgctccgctaaact |
10013878 |
T |
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| Q |
101 |
atactcaacactaattataagtttcagttgagcaaaaagtccattttactttatatttaagagctgcttttatgaaactaatgctaagctctttcactaa |
200 |
Q |
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| T |
10013879 |
atactcaacactaattataagtttcagttgagcaaaaagtccattttactttatatttaagagctgcttttatgaaactaatgctaagctctttcactaa |
10013978 |
T |
|
| Q |
201 |
aacaatgaatgatattggtattatcttatgaagttttggccacacactagttattggtgcatcactttctcccggattttcatacccttttctcaacata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10013979 |
aacaatgaatgatattggtattatcttatgaagttttggccacacactagttattggtgcatcactttctcccggattttcatacccttttctcaacata |
10014078 |
T |
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| Q |
301 |
accataaat |
309 |
Q |
| |
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||||||||| |
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| T |
10014079 |
accataaat |
10014087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 10013483 - 10013520
Alignment:
| Q |
159 |
aagagctgcttttatgaaactaatgctaagctctttca |
196 |
Q |
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| T |
10013483 |
aagagttgcctttatgaaactaatgctaagctctttca |
10013520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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