View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4814-Insertion-3 (Length: 746)
Name: NF4814-Insertion-3
Description: NF4814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4814-Insertion-3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 381 - 746
Target Start/End: Complemental strand, 24125855 - 24125489
Alignment:
| Q |
381 |
atatgacacatattgtgggacggagggagtaatatcaggatgcatttgatgacagatccagatggagagacgaacttgattaacatttttcaatattaat |
480 |
Q |
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|||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24125855 |
atattacacatattgtgagacggagagagtaatatcaggatgcatttgatgacagatccagatggagggacgaacttgattaacatttttcaatattaat |
24125756 |
T |
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| Q |
481 |
gatcatttttgaatttttataatgcgacgatcaaatcgagaaaaccctatagtttcaaggaacaacttgtgcatgc-aatgagttatgataacttaaaaa |
579 |
Q |
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| T |
24125755 |
gatcatttttgaatttttataatgcgacgatcaaatcgagaaaaccctatagtttcaaggaacaacttgtgcatgcaaatgagttatgataacttaaaaa |
24125656 |
T |
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| Q |
580 |
gttacannnnnnnactaaacacttgttattttaatcttgaaactttgttcgagggctgaaatggaccatgctattgttagccatgttctactttcgccgt |
679 |
Q |
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| T |
24125655 |
gttacatttttttactaaacacttgttattttaatcttgaaactttgttcga-ggctgaaatggaccatgctattgttagccatgttctactttcgccgt |
24125557 |
T |
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| Q |
680 |
gttcttgatagctaatgaaagcttcatttcatccttacctgctcaaacacacatgg-cacatcaatct |
746 |
Q |
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| T |
24125556 |
gttcttgatagctaatgaaagcttcatttcatccttgcctgctcaaacacacatggccacatcaatct |
24125489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 24126160 - 24125852
Alignment:
| Q |
7 |
ataaatgtatatgtgctagtaaccatattctggcattggattttaacctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccacc |
106 |
Q |
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| T |
24126160 |
ataaatgtatatgtgctagtaaccatattctggcattggattttaacctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccacc |
24126061 |
T |
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| Q |
107 |
aattgtgggctggcttattcttcctccaaggagatttagaagacttgtcttttcacttcctgagggacccatcaatgccaaaacttcacctggatttaca |
206 |
Q |
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| T |
24126060 |
aattgtgggctggcttattcttcctccaaggagatttaaaagacttgtctttccacttcctgagggacccatcaatgccaaaacttcacctggatttaca |
24125961 |
T |
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| Q |
207 |
gaaccactgatcccatacaagatatccttctcctcacttgatgtcatgccttttagtactaccttgtaggtcacatcagtgaactgcatatattccaaaa |
306 |
Q |
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| T |
24125960 |
gaaccactgatcccatacaagatatccttctcctcacttgatgtcatgccttttagtactaccttgtaggtcacatcagtgaactgcatatattccaaaa |
24125861 |
T |
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| Q |
307 |
ttaatatat |
315 |
Q |
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||| ||||| |
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| T |
24125860 |
ttagtatat |
24125852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 40 - 297
Target Start/End: Complemental strand, 24144137 - 24143877
Alignment:
| Q |
40 |
cattggattttaacctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccaccaattgtgggctggc---ttattcttcctccaag |
136 |
Q |
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| T |
24144137 |
cattggattttcacctgctcttaaggaacttggaatatattttgtcattgtaagtgatagaaccaccatttgtgggatgatgatttagccttcctccaag |
24144038 |
T |
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| Q |
137 |
gagatttagaagacttgtcttttcacttcctgagggacccatcaatgccaaaacttcacctggatttacagaaccactgatcccatacaagatatccttc |
236 |
Q |
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| T |
24144037 |
gagttttaaaagagttgtctttccacttcctgatggacccatcattgccaaaacttcacctggatttacagaaccacttatgccattcaagatatctttc |
24143938 |
T |
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| Q |
237 |
tcctcacttgatgtcatgccttttagtactaccttgtaggtcacatcagtgaactgcatat |
297 |
Q |
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| T |
24143937 |
ttcccacttgatgtcatgcctttgagtactaccttgtaggtcacatcagtgaactgcatat |
24143877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 52 - 294
Target Start/End: Original strand, 43533223 - 43533465
Alignment:
| Q |
52 |
acctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccaccaattgtgggctggcttattcttcctccaaggagatttagaagact |
151 |
Q |
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| T |
43533223 |
acctgctttttaggaacttggaatatggttgatcattgtaagttatagagccaccaatatttggttgacttaacctagctccaagtagatttaacaaaga |
43533322 |
T |
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| Q |
152 |
tgtcttttcacttcctgagggacccatcaatgccaaaacttcacctggatttacagaaccactgatcccatacaagatatccttctcctcacttgatgtc |
251 |
Q |
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| T |
43533323 |
agttttaccacctcctgagggacccatcaatgctaaaacttcccctggatttacacaaccagtgatccctttcaagatatctttttcaacatttgttgtc |
43533422 |
T |
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| Q |
252 |
atgccttttagtactaccttgtaggtcacatcagtgaactgca |
294 |
Q |
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| T |
43533423 |
atgcctttaatcactatcttgtatgtcacatccgtgaactgca |
43533465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 361 - 412
Target Start/End: Original strand, 39213461 - 39213512
Alignment:
| Q |
361 |
aataaccgtgtaaaactcaaatatgacacatattgtgggacggagggagtaa |
412 |
Q |
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| T |
39213461 |
aataaccgtgtaaaattcaaataggacacctattgtgagacggagggagtaa |
39213512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 40258725 - 40258654
Alignment:
| Q |
418 |
ggatgcatttgatgacagatccagatggagagacgaacttgattaacatttttcaatattaatgatcatttt |
489 |
Q |
| |
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| T |
40258725 |
ggatgcatttgataacagatccaaacagtgcgacgaacttgattagcatttttcaatttcaaagatcatttt |
40258654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 447 - 489
Target Start/End: Complemental strand, 39414834 - 39414792
Alignment:
| Q |
447 |
gagacgaacttgattaacatttttcaatattaatgatcatttt |
489 |
Q |
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| T |
39414834 |
gagacgaacttgattaacattttataattttaatgatcatttt |
39414792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 11649720 - 11649765
Alignment:
| Q |
361 |
aataaccgtgtaaaactcaaatatgacacatattgtgggacggagg |
406 |
Q |
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| T |
11649720 |
aataaccgtgtaaaactcaagtatgacacttattatgagacggagg |
11649765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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