View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4814-Insertion-6 (Length: 487)

Name: NF4814-Insertion-6
Description: NF4814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4814-Insertion-6
NF4814-Insertion-6
[»] chr1 (8 HSPs)
chr1 (324-487)||(34654430-34654593)
chr1 (357-486)||(39709467-39709596)
chr1 (357-487)||(615268-615397)
chr1 (357-487)||(34117583-34117701)
chr1 (410-487)||(25791202-25791279)
chr1 (439-486)||(32947228-32947275)
chr1 (212-264)||(615116-615169)
chr1 (387-435)||(26237085-26237133)
[»] chr5 (23 HSPs)
chr5 (7-161)||(7767818-7767972)
chr5 (357-485)||(7767496-7767624)
chr5 (192-281)||(7767698-7767787)
chr5 (357-481)||(27170583-27170707)
chr5 (357-484)||(1377754-1377881)
chr5 (357-487)||(6030790-6030919)
chr5 (357-487)||(26656257-26656386)
chr5 (357-487)||(26927844-26927973)
chr5 (357-485)||(21600723-21600839)
chr5 (359-487)||(6989365-6989481)
chr5 (357-487)||(1157687-1157805)
chr5 (387-486)||(25444511-25444611)
chr5 (407-487)||(7271389-7271465)
chr5 (410-485)||(18696576-18696651)
chr5 (410-485)||(38958610-38958685)
chr5 (438-487)||(41355972-41356021)
chr5 (212-264)||(27170808-27170860)
chr5 (359-402)||(41356053-41356096)
chr5 (24-71)||(7767963-7768010)
chr5 (351-402)||(38958681-38958731)
chr5 (357-399)||(7270182-7270224)
chr5 (438-487)||(27632522-27632571)
chr5 (438-487)||(36608195-36608244)
[»] chr6 (8 HSPs)
chr6 (357-487)||(21880943-21881073)
chr6 (361-486)||(3524022-3524147)
chr6 (357-486)||(34213852-34213981)
chr6 (441-485)||(20740212-20740256)
chr6 (432-485)||(34503274-34503327)
chr6 (440-482)||(14287382-14287424)
chr6 (441-486)||(22696261-22696306)
chr6 (442-486)||(11444784-11444828)
[»] chr2 (13 HSPs)
chr2 (358-487)||(17374841-17374969)
chr2 (377-487)||(4869176-4869285)
chr2 (368-483)||(34659789-34659904)
chr2 (410-482)||(3921172-3921244)
chr2 (411-484)||(1894984-1895057)
chr2 (410-481)||(1552060-1552131)
chr2 (438-482)||(3257982-3258026)
chr2 (357-487)||(17282406-17282523)
chr2 (379-422)||(11163571-11163614)
chr2 (440-486)||(5051106-5051152)
chr2 (328-362)||(23177664-23177698)
chr2 (328-362)||(23588921-23588955)
chr2 (357-402)||(1552127-1552172)
[»] chr7 (11 HSPs)
chr7 (357-487)||(3301954-3302084)
chr7 (375-486)||(1778124-1778235)
chr7 (357-458)||(39020680-39020781)
chr7 (410-487)||(11698810-11698887)
chr7 (431-485)||(29550171-29550225)
chr7 (438-481)||(47588741-47588784)
chr7 (441-486)||(40074601-40074646)
chr7 (357-401)||(29550122-29550166)
chr7 (438-486)||(36933950-36933998)
chr7 (438-486)||(5893246-5893294)
chr7 (212-255)||(29549972-29550016)
[»] scaffold0005 (2 HSPs)
scaffold0005 (363-487)||(250805-250929)
scaffold0005 (438-483)||(47736-47781)
[»] chr4 (16 HSPs)
chr4 (363-487)||(14566446-14566570)
chr4 (359-487)||(23054738-23054866)
chr4 (390-475)||(6409574-6409659)
chr4 (357-487)||(53201789-53201909)
chr4 (357-487)||(34227460-34227578)
chr4 (390-486)||(19657905-19658001)
chr4 (359-467)||(31360549-31360645)
chr4 (438-483)||(14791950-14791995)
chr4 (410-483)||(47518922-47518995)
chr4 (441-485)||(50589289-50589333)
chr4 (390-423)||(24958109-24958142)
chr4 (388-426)||(26677293-26677331)
chr4 (325-367)||(27410769-27410811)
chr4 (438-487)||(24958056-24958105)
chr4 (438-486)||(12887997-12888045)
chr4 (441-485)||(28149606-28149650)
[»] chr8 (10 HSPs)
chr8 (369-484)||(10408363-10408478)
chr8 (375-482)||(5994154-5994261)
chr8 (357-487)||(20860822-20860959)
chr8 (399-458)||(6443585-6443644)
chr8 (212-264)||(5993999-5994052)
chr8 (387-425)||(13995294-13995332)
chr8 (440-486)||(19411636-19411682)
chr8 (328-362)||(37323339-37323373)
chr8 (441-486)||(19554753-19554798)
chr8 (328-360)||(41868007-41868039)
[»] chr3 (9 HSPs)
chr3 (357-483)||(893410-893536)
chr3 (357-487)||(18270178-18270307)
chr3 (358-462)||(43275477-43275581)
chr3 (357-466)||(3576801-3576909)
chr3 (387-486)||(14993528-14993627)
chr3 (438-486)||(25498552-25498600)
chr3 (387-487)||(27741608-27741708)
chr3 (438-486)||(17113970-17114018)
chr3 (216-262)||(18270406-18270452)
[»] scaffold0009 (1 HSPs)
scaffold0009 (400-486)||(54030-54117)
[»] scaffold0015 (1 HSPs)
scaffold0015 (441-486)||(79521-79566)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 324 - 487
Target Start/End: Original strand, 34654430 - 34654593
Alignment:
Q  324 taattaaattaagtgaccaaatgatgtattaagccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaac 423  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654430 taattaaattaagggaccaaatgatgtattaagccaaaacaaagctaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaac 34654529  T
Q  424 atcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 487  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654530 atcgtcgcaactgtcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 34654593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 357 - 486
Target Start/End: Complemental strand, 39709596 - 39709467
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||  |||||||||||||| ||||    
T  39709596 ccaaaacaaagctaacaccacgatcaacgaaacaacaaaaacaaaagttgtaccaaaatcctcaaacatcgccacaactgccacaaaaacaactttcacc 39709497  T
Q  457 acccacattccgctgctcgcacacaacccc 486  Q
    |||||||||| |||||||||||||||||||    
T  39709496 acccacattctgctgctcgcacacaacccc 39709467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 615268 - 615397
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    ||||||| || |||||| |||||||||| |||||||||||||| | | ||||||||||||||||||| ||||| |||| | |||||||||||||| ||||    
T  615268 ccaaaaccaagctaacagcacgatcaacaaaacaacataaacatatggtgtaccaaaatcctcaaacgtcgtcacaac-accacaaaaacaactttcacc 615366  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
     |||| |||||| ||||||||||||||||||    
T  615367 gcccatattccgttgctcgcacacaacccct 615397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 34117583 - 34117701
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| |||||||||||||||||||||||||||            |||||||| |||||| ||||||  |||||||||||||||||||    
T  34117583 ccaaaacaaagctaacaccacgatcaacgaaacaacataaacaaa------------atcctcaagcatcgttgcaactgccacaaaaacaacttccacc 34117670  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    |||||||||||||||||||||||||||||||    
T  34117671 acccacattccgctgctcgcacacaacccct 34117701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 410 - 487
Target Start/End: Original strand, 25791202 - 25791279
Alignment:
Q  410 caaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 487  Q
    |||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  25791202 caaaatcctcaagcatcgtcacaactgtcacaaaaacaacttctaccacccacattccgctgcttgcacacaacccct 25791279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 486
Target Start/End: Complemental strand, 32947275 - 32947228
Alignment:
Q  439 acaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||    
T  32947275 acaaaaacaacttccaccatctacatcccgctgctcgcacacaacccc 32947228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 615116 - 615169
Alignment:
Q  212 ctaggagtcttaaa-tagtaacatacaaaggatagatggagagcctccaatgga 264  Q
    |||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||    
T  615116 ctaggagtcttaaagtagcaacatacaaaggatagatggggagcccccaatgga 615169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 26237133 - 26237085
Alignment:
Q  387 aacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaact 435  Q
    ||||| |||||||||||||||||||||||| ||||||||| || |||||    
T  26237133 aacaaaataaacaaaagttgtaccaaaatcttcaaacatcatcacaact 26237085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 7767972 - 7767818
Alignment:
Q  7 aactctttttgacagaaagtccaattaatgtaagtactaactatatcgactacctaactttttttcagaatactataagtatttcctctannnnnnnnnn 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  7767972 aactctttttgacagaaagtccaattaatgtaagtactaactatatcgactacctaactttttttcagaatactataagtatttcctctatttttttttt 7767873  T
Q  107 nagggatagtatttcctctatttaagaatgagtgttaaaattctgcatacatatt 161  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7767872 tagggatagtatttcctctatttaagaatgagtgttaaaattctgcatacatatt 7767818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 357 - 485
Target Start/End: Complemental strand, 7767624 - 7767496
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7767624 ccaaaacaaagctaacaccacgatcaacggaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactgccacaaaaacaacttccacc 7767525  T
Q  457 acccacattccgctgctcgcacacaaccc 485  Q
    ||||||||| |||||||||||||||||||    
T  7767524 acccacatttcgctgctcgcacacaaccc 7767496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 192 - 281
Target Start/End: Complemental strand, 7767787 - 7767698
Alignment:
Q  192 cacacaacatttttactaaactaggagtcttaaatagtaacatacaaaggatagatggagagcctccaatggactcatacaccctaatgg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7767787 cacacaacatttttactaaactaggagtcttaaatagtaacatacaaaggatagatggagagcctccaatggactcatacaccctaatgg 7767698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 357 - 481
Target Start/End: Complemental strand, 27170707 - 27170583
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||||    
T  27170707 ccaaaacaaagctaacaccacgatcaatgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcacaactgccacaaaaataacttccacc 27170608  T
Q  457 acccacattccgctgctcgcacaca 481  Q
    ||||||||||| || ||||||||||    
T  27170607 acccacattccactactcgcacaca 27170583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 357 - 484
Target Start/End: Original strand, 1377754 - 1377881
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||  ||||||||||| ||||||     
T  1377754 ccaaaacaaaactaacaccacgatcaacgaaacaacataatcaaaagttatacaaaaatccttaaacatcgtcgcaactgccacaaaaacaatttccact 1377853  T
Q  457 acccacattccgctgctcgcacacaacc 484  Q
       |||||||||||||||||||||||||    
T  1377854 tttcacattccgctgctcgcacacaacc 1377881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 6030919 - 6030790
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    ||||||| || |||||| ||||||||||||||||||||||||| | || |||||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  6030919 ccaaaaccaatctaacagcacgatcaacgaaacaacataaacatatgtggtaccaaaatcctcaaacatcgtcacaac-accacaaaaacaactttcacc 6030821  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    | ||| ||||||||||||||||| |||||||    
T  6030820 atccatattccgctgctcgcacaaaacccct 6030790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 26656257 - 26656386
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||| ||||||||| || |||| | |||||||||||||| ||||    
T  26656257 ccaaaaccaaactaacaacacgatcaacgaaacaacataaacatatgttgtaccaaaatcttcaaacatcttcacaac-accacaaaaacaactttcacc 26656355  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    ||||| |||| ||| || |||||| ||||||    
T  26656356 acccatattctgcttcttgcacacgacccct 26656386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 26927844 - 26927973
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||| ||||||||| || |||| | |||||||||||||| ||||    
T  26927844 ccaaaaccaaactaacaacacgatcaacgaaacaacataaacatatgttgtaccaaaatcttcaaacatcttcacaac-accacaaaaacaactttcacc 26927942  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    ||||| |||| ||| || |||||| ||||||    
T  26927943 acccatattctgcttcttgcacacgacccct 26927973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 357 - 485
Target Start/End: Original strand, 21600723 - 21600839
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||||||||| |||||||||||||||||||||            |||||||||||||||| |||||  ||||||||||||||| |||    
T  21600723 ccaaaacaaagctaacatcacgaacaacgaaacaacataaacaaa------------atcctcaaacatcgtcacaactgccacaaaaacaacttctacc 21600810  T
Q  457 acccacattccgctgctcgcacacaaccc 485  Q
    |||||||||||||||||||||||||||||    
T  21600811 acccacattccgctgctcgcacacaaccc 21600839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 359 - 487
Target Start/End: Original strand, 6989365 - 6989481
Alignment:
Q  359 aaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccac 458  Q
    |||||||| |||||| |||||||||||||||||||||||||||            |||||||| ||||||| |||||  ||||||||||||||| |||||    
T  6989365 aaaacaaagctaacaccacgatcaacgaaacaacataaacaaa------------atcctcaagcatcgtcacaactgccacaaaaacaacttctaccac 6989452  T
Q  459 ccacattccgctgctcgcacacaacccct 487  Q
    |||||||||||||||||||||||||||||    
T  6989453 ccacattccgctgctcgcacacaacccct 6989481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 1157805 - 1157687
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||            ||||||| ||||||| |||||  ||||||||||||||| |||    
T  1157805 ccaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaa------------tcctcaagcatcgtcacaactgccacaaaaacaacttctacc 1157718  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    ||||||||||||||||||||||| |||||||    
T  1157717 acccacattccgctgctcgcacataacccct 1157687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 25444611 - 25444511
Alignment:
Q  387 aacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaa-ctatcacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    |||||||||||||||||||| | ||||| ||||||||||| |||||| ||   ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  25444611 aacaacataaacaaaagttggatcaaaaccctcaaacatcatcgcaagctgctacaaaaacaacttccaccacctacattccgctgatcgcacacaaccc 25444512  T
Q  486 c 486  Q
    |    
T  25444511 c 25444511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 407 - 487
Target Start/End: Original strand, 7271389 - 7271465
Alignment:
Q  407 taccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 487  Q
    ||||||||||||||||||||||| ||||    ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  7271389 taccaaaatcctcaaacatcgtcacaac----acaaaaacaactttcaccacccatattccgctgctcgcacacaacccct 7271465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 410 - 485
Target Start/End: Original strand, 18696576 - 18696651
Alignment:
Q  410 caaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    |||||||||||| |||||||||||||  ||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  18696576 caaaatcctcaagcatcgtcgcaactgccacaataacaactttcaccacccacattccactgctcgcacacaaccc 18696651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 485
Target Start/End: Complemental strand, 38958685 - 38958610
Alignment:
Q  410 caaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    |||||||||||| ||||||| | |||  ||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  38958685 caaaatcctcaagcatcgtcactactgacacaaaaacaacttctaccacccacattccactgcccgcacacaaccc 38958610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 41356021 - 41355972
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 487  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  41356021 cacaaaaataacttctaccacccacattccgctgctcgcacacaacccct 41355972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 27170860 - 27170808
Alignment:
Q  212 ctaggagtcttaaatagtaacatacaaaggatagatggagagcctccaatgga 264  Q
    ||||||||||||||||| |||||||||||||||||||| |||||  |||||||    
T  27170860 ctaggagtcttaaatagcaacatacaaaggatagatggggagccctcaatgga 27170808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 41356096 - 41356053
Alignment:
Q  359 aaaacaaaactaacatcacgatcaacgaaacaacataaacaaaa 402  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  41356096 aaaacaaagctaacaccacgatcaacgaaacaacataaacaaaa 41356053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 7768010 - 7767963
Alignment:
Q  24 agtccaattaatgtaagtactaactatatcgactacctaacttttttt 71  Q
    |||||||||| |||||||| |||||||||| ||||||||||| |||||    
T  7768010 agtccaattattgtaagtaataactatatctactacctaactcttttt 7767963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 38958731 - 38958681
Alignment:
Q  351 attaagccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaa 402  Q
    ||||||||||| |||| |||||| || |||||||||||||||||||||||||    
T  38958731 attaagccaaa-caaagctaacaacatgatcaacgaaacaacataaacaaaa 38958681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 7270182 - 7270224
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaaca 399  Q
    ||||||| || |||||| |||||||||||||||||||||||||    
T  7270182 ccaaaaccaagctaacagcacgatcaacgaaacaacataaaca 7270224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 27632571 - 27632522
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 487  Q
    ||||||||  |||||||||||| |||| | ||||||||||||||||||||    
T  27632571 cacaaaaattacttccaccacctacatcctgctgctcgcacacaacccct 27632522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 36608244 - 36608195
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 487  Q
    |||||||||||||| ||||||  ||| |||||||||||| ||||||||||    
T  36608244 cacaaaaacaactttcaccacttacactccgctgctcgcgcacaacccct 36608195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 5e-51; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 21880943 - 21881073
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||||||    
T  21880943 ccaaaacaaagctaacaccacgatcaacgaagcaacataaacaaaagttgtaccaaaatcctcaaacatcgtcacaactgccacaaaaataacttccacc 21881042  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    |||||||||||||||||||||||||||||||    
T  21881043 acccacattccgctgctcgcacacaacccct 21881073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 361 - 486
Target Start/End: Complemental strand, 3524147 - 3524022
Alignment:
Q  361 aacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccaccc 460  Q
    |||||| ||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||  |||||||||||||| || ||||     
T  3524147 aacaaagctatcaccatgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcatcacaactgccacaaaaacaacttacatcacct 3524048  T
Q  461 acattccgctgctcgcacacaacccc 486  Q
    ||| || ||||||| |||||||||||    
T  3524047 acaatctgctgctcacacacaacccc 3524022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 357 - 486
Target Start/End: Complemental strand, 34213981 - 34213852
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    ||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||  | ||  |||||||||||||| ||||    
T  34213981 ccaaaacaaagttaacaccacgatcaacaaaacaacataaacaaaagttgtaccaaaatccccaaacatcctcatagctgccacaaaaacaactttcacc 34213882  T
Q  457 acccacattccgctgctcgcacacaacccc 486  Q
    |||||||||  |||||| ||||||||||||    
T  34213881 acccacattttgctgcttgcacacaacccc 34213852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 20740212 - 20740256
Alignment:
Q  441 aaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  20740212 aaaaacaacttctatcacccacattccgctgctcgcacacaaccc 20740256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 485
Target Start/End: Complemental strand, 34503327 - 34503274
Alignment:
Q  432 aactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    ||||| |||||||||||||||||||||| |||||||| |||||| |||| ||||    
T  34503327 aactaccacaaaaacaacttccaccacctacattccgatgctcgtacactaccc 34503274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 14287382 - 14287424
Alignment:
Q  440 caaaaacaacttccaccacccacattccgctgctcgcacacaa 482  Q
    ||||| |||||||||||||| |||||||||||||| |||||||    
T  14287382 caaaatcaacttccaccacctacattccgctgctcacacacaa 14287424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 22696261 - 22696306
Alignment:
Q  441 aaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    ||||||||||||||||||| |||||  | |||||||||||||||||    
T  22696261 aaaaacaacttccaccacctacattttgttgctcgcacacaacccc 22696306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 11444828 - 11444784
Alignment:
Q  442 aaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||||||||||||||||| || |||  ||||||||||||||||||    
T  11444828 aaaacaacttccaccacctacgttcgactgctcgcacacaacccc 11444784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 358 - 487
Target Start/End: Original strand, 17374841 - 17374969
Alignment:
Q  358 caaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacca 457  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  |||||||| |||||||||||    
T  17374841 caaaacaaagctaacaccacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgt-acaactgccacaaaaataacttccacca 17374939  T
Q  458 cccacattccgctgctcgcacacaacccct 487  Q
    ||||||||||||||||||||||||||||||    
T  17374940 cccacattccgctgctcgcacacaacccct 17374969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 377 - 487
Target Start/End: Original strand, 4869176 - 4869285
Alignment:
Q  377 cgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgc 476  Q
    ||||||||||||||||||||||| | || |||||||||||||||||||||||| |||| | |||||||||||||| ||||||||| ||||||||||||||    
T  4869176 cgatcaacgaaacaacataaacatatgtggtaccaaaatcctcaaacatcgtcacaac-accacaaaaacaactttcaccacccatattccgctgctcgc 4869274  T
Q  477 acacaacccct 487  Q
    ||| |||||||    
T  4869275 acaaaacccct 4869285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 368 - 483
Target Start/End: Original strand, 34659789 - 34659904
Alignment:
Q  368 ctaacatcacgatcaacgaaacaacataaacaaaagtt-gtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattc 466  Q
    |||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||  ||| | |||||||||||||| ||||||||| ||||    
T  34659789 ctaacaacacgatcaacgaaacaacataaacatatgtttgtaccaaaatcctcaaacatcgtctgaac-accacaaaaacaactttcaccacccatattc 34659887  T
Q  467 cgctgctcgcacacaac 483  Q
    |||||||||||||||||    
T  34659888 cgctgctcgcacacaac 34659904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 410 - 482
Target Start/End: Original strand, 3921172 - 3921244
Alignment:
Q  410 caaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaa 482  Q
    |||||||||||| ||||||| |||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  3921172 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgctgctcgcacacaa 3921244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 484
Target Start/End: Original strand, 1894984 - 1895057
Alignment:
Q  411 aaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaacc 484  Q
    ||||||||||| ||||||| |||||  ||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  1894984 aaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattccgttgctcacacacaacc 1895057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 1552131 - 1552060
Alignment:
Q  410 caaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacaca 481  Q
    |||||||||||| ||||||| |||||  ||||||||||||||| ||||| ||||||| ||||||||||||||    
T  1552131 caaaatcctcaagcatcgtcacaactgccacaaaaacaacttctaccacacacattctgctgctcgcacaca 1552060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 3258026 - 3257982
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaa 482  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  3258026 cacaaaaacaacttccaccacctacattccgctgctcgcacacaa 3257982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 17282523 - 17282406
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||| ||| |||||| ||||||||||||||||||||||||            ||||||||||| ||||||| |||||  ||||||||||||||| |||    
T  17282523 ccaaaataaatctaacaccacgatcaacgaaacaacataaac------------aaaatcctcaagcatcgtcacaactgccacaaaaacaacttctacc 17282436  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    | ||||| || ||||||| ||||||||||||    
T  17282435 a-ccacaatctgctgctcacacacaacccct 17282406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 11163614 - 11163571
Alignment:
Q  379 atcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaa 422  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  11163614 atcaacgacacaacataaacaaaagttgtacaaaaatcctcaaa 11163571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 486
Target Start/End: Original strand, 5051106 - 5051152
Alignment:
Q  440 caaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||||||||||||||| ||  ||||||| ||||||||||||||||||    
T  5051106 caaaaacaacttccacgacttacattcccctgctcgcacacaacccc 5051152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 23177698 - 23177664
Alignment:
Q  328 taaattaagtgaccaaatgatgtattaagccaaaa 362  Q
    ||||||||| |||||||||||||||||||||||||    
T  23177698 taaattaagggaccaaatgatgtattaagccaaaa 23177664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 23588955 - 23588921
Alignment:
Q  328 taaattaagtgaccaaatgatgtattaagccaaaa 362  Q
    ||||||||| |||||||||||||||||||||||||    
T  23588955 taaattaagggaccaaatgatgtattaagccaaaa 23588921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 1552172 - 1552127
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaa 402  Q
    |||||||| | |||||| |||||||||| |||||||||||||||||    
T  1552172 ccaaaacatagctaacaccacgatcaacaaaacaacataaacaaaa 1552127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 3301954 - 3302084
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||  |||||||| ||||||||||    
T  3301954 ccaaaacaaagctaacaccacgatcaacgaaacaacataaacataagttgtaccaaaatcctcaaacatggtcacaactgccacaaaaataacttccacc 3302053  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    |||||||||||||||||| |||||| |||||    
T  3302054 acccacattccgctgctcacacacaccccct 3302084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 375 - 486
Target Start/End: Original strand, 1778124 - 1778235
Alignment:
Q  375 cacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctc 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||  |||||||||||||||||||||| |||| || || ||     
T  1778124 cacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacattgtcacaactgccacaaaaacaacttccaccacctacataccactactg 1778223  T
Q  475 gcacacaacccc 486  Q
    | ||||||||||    
T  1778224 gtacacaacccc 1778235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 357 - 458
Target Start/End: Complemental strand, 39020781 - 39020680
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||  |||||||||||||||||||    
T  39020781 ccaaaacaaagctaacaccacaatcaacgaaacaacataaacaaaagttgttacaaaatcctcaaacattgtcacaactgccacaaaaacaacttccacc 39020682  T
Q  457 ac 458  Q
    ||    
T  39020681 ac 39020680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 410 - 487
Target Start/End: Complemental strand, 11698887 - 11698810
Alignment:
Q  410 caaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 487  Q
    ||||||| |||| ||||||| |||||  ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  11698887 caaaatcatcaagcatcgtcacaactgccacaaaaacaacttctaccacccacattctgctgctcgcacacaacccct 11698810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 29550171 - 29550225
Alignment:
Q  431 caactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    |||||| ||||||||||||||  |||| |||||||||||||||||||||||||||    
T  29550171 caactaccacaaaaacaacttttaccatccacattccgctgctcgcacacaaccc 29550225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 481
Target Start/End: Original strand, 47588741 - 47588784
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacaca 481  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  47588741 cacaaaaacaacttccaccacctacattctgctgctcgcacaca 47588784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 40074646 - 40074601
Alignment:
Q  441 aaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||    
T  40074646 aaaaacaacttccaccaacaacaatccgctgctcgcacacaacccc 40074601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 29550122 - 29550166
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaa 401  Q
    |||||| ||| |||||| |||||||||||||||||||||||||||    
T  29550122 ccaaaataaagctaacaccacgatcaacgaaacaacataaacaaa 29550166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 36933950 - 36933998
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||| ||||||||||||||||| ||||||  ||||||||||||||||||    
T  36933950 cacagaaacaacttccaccacctacattcaactgctcgcacacaacccc 36933998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 5893294 - 5893246
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||||||| |||||||||| || |||||||||||||||||  |||||||    
T  5893294 cacaaaaataacttccaccgcctacattccgctgctcgcattcaacccc 5893246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 29549972 - 29550016
Alignment:
Q  212 ctaggagtcttaaa-tagtaacatacaaaggatagatggagagcc 255  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||    
T  29549972 ctaggagtcttaaagtagcaacatataaaggatagatggagagcc 29550016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 363 - 487
Target Start/End: Original strand, 250805 - 250929
Alignment:
Q  363 caaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccac 462  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||   |||| ||||||||||||||||| ||    
T  250805 caaagctaacaccacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatagtcacaacagccacataaacaacttccaccaccaac 250904  T
Q  463 attccgctgctcgcacacaacccct 487  Q
    |||||||||||||||||||||||||    
T  250905 attccgctgctcgcacacaacccct 250929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 47781 - 47736
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaac 483  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  47781 cacaaaaacaacttccaccacctacattccgctgctcgcacacaac 47736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 363 - 487
Target Start/End: Complemental strand, 14566570 - 14566446
Alignment:
Q  363 caaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccac 462  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||   |||| ||||||||||||||||| ||    
T  14566570 caaagctaacaccacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatagtcacaacagccacataaacaacttccaccaccaac 14566471  T
Q  463 attccgctgctcgcacacaacccct 487  Q
    |||||||||||||||||||||||||    
T  14566470 attccgctgctcgcacacaacccct 14566446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 359 - 487
Target Start/End: Complemental strand, 23054866 - 23054738
Alignment:
Q  359 aaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccac 458  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||  |||||||||||||||||||||    
T  23054866 aaaacaaagctaacaccacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacattgctgaaactgccacaaaaacaacttccaccac 23054767  T
Q  459 ccacattccgctgctcgcacacaacccct 487  Q
    |||||||||| ||||||||||||| ||||    
T  23054766 ccacattccggtgctcgcacacaaaccct 23054738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 390 - 475
Target Start/End: Original strand, 6409574 - 6409659
Alignment:
Q  390 aacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcg 475  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||  |||||||||||||||||||||| |||||||||||||||    
T  6409574 aacataaacaaaagttgcaccaaaatcctcaaacatcatcacaactgccacaaaaacaacttccaccacctacattccgctgctcg 6409659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 53201789 - 53201909
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||            ||||||| ||||||| |||||  ||||||||||||||| |||    
T  53201789 ccaaaacaaagctaacatcacgatcaacaaaacaacataaacaaaa------------tcctcaagcatcgtcacaactgccacaaaaacaacttctacc 53201876  T
Q  457 ac--ccacattccgctgctcgcacacaacccct 487  Q
    ||  |||||||||||||||||||||||||||||    
T  53201877 acacccacattccgctgctcgcacacaacccct 53201909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 34227578 - 34227460
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||            ||||||| ||||||| |||||  ||||||||||||||| |||    
T  34227578 ccaaaacaaagctaacaccacgatcaacgaaacaacataaacaaaa------------tcctcaagcatcgtcacaactgccacaaaaacaacttctacc 34227491  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    |||||||||  ||| ||||||||||||||||    
T  34227490 acccacattttgctactcgcacacaacccct 34227460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 486
Target Start/End: Original strand, 19657905 - 19658001
Alignment:
Q  390 aacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaa-ctatcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||||||| ||||||||||||||| |||||||||||| || ||| ||  ||||||||||||||||| ||   ||||||||||||||||||||||||||    
T  19657905 aacataaagaaaagttgtaccaaattcctcaaacatcatcacaagctgccacaaaaacaacttcca-caattacattccgctgctcgcacacaacccc 19658001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 31360645 - 31360549
Alignment:
Q  359 aaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccac 458  Q
    |||||||||||||||||||||||||||| |||||||||||            |||||| |||||||||||| ||| || ||||||||||||||| |||||    
T  31360645 aaaacaaaactaacatcacgatcaacgacacaacataaac------------aaaatcttcaaacatcgtcacaattaccacaaaaacaacttctaccac 31360558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 14791950 - 14791995
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaac 483  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  14791950 cacaaaaacaacttccaccacctacattccgctgctcgcacacaac 14791995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 483
Target Start/End: Complemental strand, 47518995 - 47518922
Alignment:
Q  410 caaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctcgcacacaac 483  Q
    ||||| |||||| ||||| | |||||  ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  47518995 caaaaacctcaagcatcgccacaactgccacaaaaacaacttctaccacccacattctgctgctcgcacacaac 47518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 50589289 - 50589333
Alignment:
Q  441 aaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  50589289 aaaaacaacttccaccacccacaatccgctgctcgcacacaaccc 50589333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 24958142 - 24958109
Alignment:
Q  390 aacataaacaaaagttgtaccaaaatcctcaaac 423  Q
    ||||||||||||||||||||||||||||||||||    
T  24958142 aacataaacaaaagttgtaccaaaatcctcaaac 24958109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 26677293 - 26677331
Alignment:
Q  388 acaacataaacaaaagttgtaccaaaatcctcaaacatc 426  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  26677293 acaacataaacaaaagttgtaccaaatccctcaaacatc 26677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 27410769 - 27410811
Alignment:
Q  325 aattaaattaagtgaccaaatgatgtattaagccaaaacaaaa 367  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||    
T  27410769 aattaagttaagagaccaaatgatgtattaagccaaaaaaaaa 27410811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 24958105 - 24958056
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccct 487  Q
    |||||||||||||||||||||| |||||  | ||||||| ||||||||||    
T  24958105 cacaaaaacaacttccaccacctacattatgttgctcgctcacaacccct 24958056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 12887997 - 12888045
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||||||||||||||| || || |||||||| ||||||||||| |||||    
T  12887997 cacaaaaacaacttcctccccctacattccgttgctcgcacaccacccc 12888045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 28149650 - 28149606
Alignment:
Q  441 aaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    ||||||||||||||||||| ||| || | ||||||||||||||||    
T  28149650 aaaaacaacttccaccacctacaatcagttgctcgcacacaaccc 28149606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 369 - 484
Target Start/End: Original strand, 10408363 - 10408478
Alignment:
Q  369 taacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccg 468  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||  ||||||||||||||||||| || ||||||||    
T  10408363 taacatcacaatcaactaaacaacataaacaaaagttgtaccgaaattctcaaacatcgtcgcaactgccacaaaaacaacttccaccgcctacattccg 10408462  T
Q  469 ctgctcgcacacaacc 484  Q
    ||||||||||||||||    
T  10408463 ctgctcgcacacaacc 10408478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 375 - 482
Target Start/End: Original strand, 5994154 - 5994261
Alignment:
Q  375 cacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccacccacattccgctgctc 474  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |||| |||||||    
T  5994154 cacgatcaacgaaacaacataaacaaaagatgtaccaaaatcctcaaacatcgtcacaactaccacaaaaacaacttccaccacctagattctgctgctc 5994253  T
Q  475 gcacacaa 482  Q
    || |||||    
T  5994254 gcgcacaa 5994261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 357 - 487
Target Start/End: Original strand, 20860822 - 20860959
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcac-------aaaaacaac 449  Q
    |||||||||| |||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||  ||| |||||  |||       ||||| |||    
T  20860822 ccaaaacaaagctaacaccgcaatcaacgaaacaacataaacaaaagttgtaccaaagtcctcaaacaaggtcacaactgccacacaaaaaaaaaaaaac 20860921  T
Q  450 ttccaccacccacattccgctgctcgcacacaacccct 487  Q
    |||||||| ||||||| |||||||| ||||||||||||    
T  20860922 ttccaccaaccacatttcgctgctctcacacaacccct 20860959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 6443585 - 6443644
Alignment:
Q  399 aaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccaccac 458  Q
    |||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||    
T  6443585 aaaagttgtaccaaaatcctcaaacatcatcacaactgccacaaaaacaacttccaccac 6443644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 5993999 - 5994052
Alignment:
Q  212 ctaggagtcttaaa-tagtaacatacaaaggatagatggagagcctccaatgga 264  Q
    |||||||||||||| ||| |||||||||||||||||||| || |||||||||||    
T  5993999 ctaggagtcttaaagtagcaacatacaaaggatagatggggaacctccaatgga 5994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 13995332 - 13995294
Alignment:
Q  387 aacaacataaacaaaagttgtaccaaaatcctcaaacat 425  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  13995332 aacaacataaacaaaagttgtaccaaatccctcaaacat 13995294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 19411682 - 19411636
Alignment:
Q  440 caaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||||| ||||||||||||| || ||||| |||||||||||||||||    
T  19411682 caaaaaaaacttccaccacctacgttccggtgctcgcacacaacccc 19411636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 37323373 - 37323339
Alignment:
Q  328 taaattaagtgaccaaatgatgtattaagccaaaa 362  Q
    ||||||||| |||||||||||||||||||||||||    
T  37323373 taaattaagggaccaaatgatgtattaagccaaaa 37323339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 19554753 - 19554798
Alignment:
Q  441 aaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    ||||| ||||||||||||  |||||||| |||||||||||||||||    
T  19554753 aaaaaaaacttccaccacttacattccggtgctcgcacacaacccc 19554798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 360
Target Start/End: Original strand, 41868007 - 41868039
Alignment:
Q  328 taaattaagtgaccaaatgatgtattaagccaa 360  Q
    ||||||||| |||||||||||||||||||||||    
T  41868007 taaattaagggaccaaatgatgtattaagccaa 41868039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 483
Target Start/End: Complemental strand, 893536 - 893410
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    |||||||||| |||||| ||||||||| |||| |||||||| |||||||||||||||||| | |||||||||| |||||  ||  |||||||||||||||    
T  893536 ccaaaacaaagctaacaccacgatcaatgaaaaaacataaataaaagttgtaccaaaatctttaaacatcgtcacaactgccatcaaaacaacttccacc 893437  T
Q  457 acccacattccgctgctcgcacacaac 483  Q
    |||||||||||||||||||||||||||    
T  893436 acccacattccgctgctcgcacacaac 893410  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 18270307 - 18270178
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    ||||||| || |||||| ||||||||||||||||||||||||  | ||||||||||||||||||||||||||| |||| | |||||||| ||||| ||||    
T  18270307 ccaaaaccaagctaacagcacgatcaacgaaacaacataaacttatgttgtaccaaaatcctcaaacatcgtcacaac-accacaaaaataactttcacc 18270209  T
Q  457 acccacattccgctgctcgcacacaacccct 487  Q
    ||||| |||||||||||||||||||||||||    
T  18270208 acccatattccgctgctcgcacacaacccct 18270178  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 358 - 462
Target Start/End: Original strand, 43275477 - 43275581
Alignment:
Q  358 caaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacca 457  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |  ||||||||||||||||||||    
T  43275477 caaaacaaagctaacaccacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacattgtcacaagtgccacaaaaacaacttccacca 43275576  T
Q  458 cccac 462  Q
    |||||    
T  43275577 cccac 43275581  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 3576909 - 3576801
Alignment:
Q  357 ccaaaacaaaactaacatcacgatcaacgaaacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaactatcacaaaaacaacttccacc 456  Q
    ||||||| || |||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||| |||| | |||||||||||||| ||||    
T  3576909 ccaaaaccaagctaacagcacgatcaacgaaacaacataaacatatgttgtactaaaatcctcaaacgtcgtcacaac-accacaaaaacaactttcacc 3576811  T
Q  457 acccacattc 466  Q
    ||||| ||||    
T  3576810 acccatattc 3576801  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 387 - 486
Target Start/End: Original strand, 14993528 - 14993627
Alignment:
Q  387 aacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaa-ctatcacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    |||||||||||||||||||||||||||  ||||||||||| || ||| |  |||||||||||||||||||||   |||||||||||||||||||||||||    
T  14993528 aacaacataaacaaaagttgtaccaaatccctcaaacatcatcacaagccgtcacaaaaacaacttccacca-ttacattccgctgctcgcacacaaccc 14993626  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 25498552 - 25498600
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  25498552 cacaaaaacaacttccaccacctacattctgctgctcgcacacaacccc 25498600  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 487
Target Start/End: Complemental strand, 27741708 - 27741608
Alignment:
Q  387 aacaacataaacaaaagttgtaccaaaatcctcaaacatcgtcgcaa-ctatcacaaaaacaacttccaccacccacattccgctgctcgcacacaaccc 485  Q
    ||||||||||||||||||||||| |||  ||||||||||| || |||  |  |||||||||||| |||||||   |||||||| ||||||||||||||||    
T  27741708 aacaacataaacaaaagttgtactaaatccctcaaacatcatcacaagttgccacaaaaacaacatccacca-ttacattccgttgctcgcacacaaccc 27741610  T
Q  486 ct 487  Q
    ||    
T  27741609 ct 27741608  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 17114018 - 17113970
Alignment:
Q  438 cacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  17114018 cacaaaagcaacttccactacctacattccgctgctcgcacacaacccc 17113970  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 18270452 - 18270406
Alignment:
Q  216 gagtcttaaatagtaacatacaaaggatagatggagagcctccaatg 262  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18270452 gagttttaaatagtaacatacaaaggatagatggggtgcctccaatg 18270406  T

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Target: scaffold0009 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 54030 - 54117
Alignment:
Q  400 aaagttgtaccaaaatcctcaaacatcgtcgcaa-ctatcacaaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    ||||||||||||||| ||||||||||| || ||| ||  || ||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  54030 aaagttgtaccaaaaccctcaaacatcatcacaagctgacagaaaaacaacttccaccacctacatttcgctgctcgcacataacccc 54117  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 79566 - 79521
Alignment:
Q  441 aaaaacaacttccaccacccacattccgctgctcgcacacaacccc 486  Q
    |||||||||||||||| || | | ||||||||||||||||||||||    
T  79566 aaaaacaacttccaccgcctataatccgctgctcgcacacaacccc 79521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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