View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4814-Insertion-7 (Length: 467)
Name: NF4814-Insertion-7
Description: NF4814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4814-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 464
Target Start/End: Original strand, 12120237 - 12120695
Alignment:
| Q |
6 |
cagctatagcttcagggttttgattttattacttttttgcgtaacctcgtgatatttaggtgcccaagctaatctgattgattttataacaatttttgaa |
105 |
Q |
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| T |
12120237 |
cagctatagcttcagggtgttgattttattacttttttgcctaacctcgtgatactt-ggtgcccaagctaatctaattgattttataacaatttttgaa |
12120335 |
T |
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| Q |
106 |
gatnnnnnnnnnntacttttaatacggtgaaaattgcatatggtgtcaatttatgtgttcaataatannnnnnnnnnncgacagaaatgtgttaaataat |
205 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12120336 |
gataaaaaaaaaatacttttaatacggtgaaaattgcatatggtgtcaatttatgtgttcaataatatatttttttt-cgacagaaatgtgttaaataat |
12120434 |
T |
|
| Q |
206 |
tttcgacaatttctagtcatgccnnnnnnnnnn-tcgattaccccatgaaatgactaaagaggagtgctatgaacattctctttctcacattctctctaa |
304 |
Q |
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| T |
12120435 |
tttcgacaatttctagtcatgccaaaaaaaaaaatcgattaccccatgaaatgactaaagaggagtgctatgaacattctctttctcacattctctctaa |
12120534 |
T |
|
| Q |
305 |
cacccaatcgattaccccattaaa-ttgggtgtaatggtaattaattcctggactcaattccattttcaaagaaaaatgacgtagcaaccaattttaaat |
403 |
Q |
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| T |
12120535 |
cacccaaacgattaccccattaaaattgggtgtaatggtaattaattcctggactcaattccattttcaaagaaaaatgacgtagcaaccaattttaaat |
12120634 |
T |
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| Q |
404 |
ttagggacatcgctgggaattaggacttggtgttgaatatgttactgaccattttccatat |
464 |
Q |
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| T |
12120635 |
ttagggacatcgctgggaattaggacttggtgttgaatatgttactgaacattttccatat |
12120695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 16895236 - 16895281
Alignment:
| Q |
262 |
aagaggagtgctatgaacattctctttctcacattctctctaacac |
307 |
Q |
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| T |
16895236 |
aagagaagtgctatgaacactctttttctaacattctctctaacac |
16895281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 24886034 - 24886077
Alignment:
| Q |
264 |
gaggagtgctatgaacattctctttctcacattctctctaacac |
307 |
Q |
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| T |
24886034 |
gaggagtgctatggacattctctttctaacactctctctaacac |
24886077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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