View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4814_high_1 (Length: 398)
Name: NF4814_high_1
Description: NF4814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4814_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 37454126 - 37454492
Alignment:
| Q |
16 |
atgaacatgtaaataaaataccaaaacaaattaaatagaagattggcttccagttaacaacaaaacaattgtatctgaacagaaaaaacaagctcaacca |
115 |
Q |
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| T |
37454126 |
atgaacatgtaaataaaataccaaaacaaattaaatagaagattggcttccagttaacaacaaaacaattgtatctgaacagaaaaaacaagctcaacca |
37454225 |
T |
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| Q |
116 |
tccctaaaaaagaaaataaatgttgagacttggaacccctgaaaacacattcccaataatggtgtgagtctaacaccgttaagaaacccccaaataagag |
215 |
Q |
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| T |
37454226 |
tccctaaaaaagaaaataaatgttgagacttggaacccctgaaaacacattcccaataatggtgtgagtctaacaccgttaagaaacccccaaataagag |
37454325 |
T |
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| Q |
216 |
aagagcacagtttcccgcatttatcaccagcgaaggtattacaaatagacaaggtatagttgaagagtaaagcagggaataactttgaaaggtgagagga |
315 |
Q |
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| T |
37454326 |
aagagcacagtttcccgcatttatcaccagcgaaggtattacaaatagacaagatatagttgaagagtaaagcagggaataactttgaaaggtgagagga |
37454425 |
T |
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| Q |
316 |
aatgttaaagtaaaaataattggatgctgctgcaataataactaattcagtattccaacatggaaag |
382 |
Q |
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| T |
37454426 |
aatgttaaagtaaaaataattggatgctgctgcaataataactaattcagtattccaacatggaaag |
37454492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 37454517 - 37454553
Alignment:
| Q |
346 |
tgcaataataactaattcagtattccaacatggaaag |
382 |
Q |
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| T |
37454517 |
tgcaataatgactaattcaatattccaacatggaaag |
37454553 |
T |
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