View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4814_high_5 (Length: 240)

Name: NF4814_high_5
Description: NF4814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4814_high_5
NF4814_high_5
[»] chr8 (29 HSPs)
chr8 (1-131)||(5957835-5957965)
chr8 (3-136)||(10284598-10284731)
chr8 (3-136)||(37038479-37038612)
chr8 (3-137)||(34012263-34012397)
chr8 (3-137)||(504088-504222)
chr8 (3-129)||(14547929-14548055)
chr8 (3-136)||(1179907-1180040)
chr8 (1-137)||(15197332-15197468)
chr8 (9-136)||(15258902-15259029)
chr8 (10-137)||(43414555-43414682)
chr8 (3-137)||(23122564-23122698)
chr8 (3-84)||(9122237-9122318)
chr8 (3-136)||(12831047-12831180)
chr8 (1-138)||(40423908-40424045)
chr8 (3-96)||(8841399-8841492)
chr8 (10-134)||(10621061-10621185)
chr8 (8-64)||(40467772-40467828)
chr8 (10-139)||(15048155-15048284)
chr8 (3-84)||(44507054-44507135)
chr8 (1-52)||(20074907-20074958)
chr8 (10-136)||(16056375-16056501)
chr8 (17-94)||(38229470-38229547)
chr8 (13-95)||(14055569-14055651)
chr8 (1-84)||(17443877-17443960)
chr8 (1-136)||(32032725-32032859)
chr8 (10-136)||(16383377-16383503)
chr8 (10-136)||(24307767-24307893)
chr8 (12-50)||(42221601-42221639)
chr8 (3-48)||(42354555-42354600)
[»] chr2 (32 HSPs)
chr2 (137-222)||(8085551-8085637)
chr2 (1-136)||(17473020-17473155)
chr2 (1-136)||(33436065-33436200)
chr2 (3-137)||(13438342-13438476)
chr2 (3-136)||(20700815-20700948)
chr2 (3-139)||(4060682-4060818)
chr2 (1-136)||(7465700-7465835)
chr2 (10-137)||(28381629-28381756)
chr2 (1-131)||(19930785-19930915)
chr2 (1-131)||(28863460-28863590)
chr2 (4-138)||(40701476-40701610)
chr2 (3-136)||(9058480-9058613)
chr2 (10-136)||(38273116-38273242)
chr2 (3-136)||(10249349-10249482)
chr2 (1-131)||(41575142-41575273)
chr2 (10-136)||(30915463-30915589)
chr2 (3-136)||(38882778-38882913)
chr2 (10-136)||(42257193-42257319)
chr2 (27-136)||(5574479-5574588)
chr2 (3-136)||(32505615-32505748)
chr2 (12-136)||(2533124-2533247)
chr2 (1-136)||(33436211-33436346)
chr2 (10-136)||(36168836-36168962)
chr2 (10-136)||(45097709-45097835)
chr2 (13-137)||(40613879-40614003)
chr2 (31-137)||(27864703-27864809)
chr2 (1-138)||(17819969-17820106)
chr2 (1-136)||(38732354-38732489)
chr2 (10-136)||(26891478-26891604)
chr2 (1-51)||(44152012-44152062)
chr2 (9-63)||(3440052-3440106)
chr2 (12-50)||(17823874-17823912)
[»] chr5 (24 HSPs)
chr5 (3-136)||(35943859-35943992)
chr5 (3-137)||(33149605-33149739)
chr5 (3-136)||(2740274-2740407)
chr5 (3-139)||(35785196-35785332)
chr5 (1-136)||(36732907-36733042)
chr5 (3-129)||(13811659-13811785)
chr5 (5-137)||(40145406-40145538)
chr5 (3-137)||(14831813-14831947)
chr5 (1-131)||(18520849-18520979)
chr5 (3-136)||(31008988-31009121)
chr5 (10-137)||(28177774-28177901)
chr5 (10-136)||(15409584-15409710)
chr5 (10-136)||(6679698-6679824)
chr5 (4-69)||(2177431-2177496)
chr5 (8-83)||(21370057-21370132)
chr5 (10-137)||(26720515-26720642)
chr5 (10-137)||(26990264-26990391)
chr5 (10-69)||(36875586-36875645)
chr5 (1-52)||(20073481-20073532)
chr5 (10-109)||(42414276-42414375)
chr5 (10-136)||(2252142-2252268)
chr5 (10-136)||(3921239-3921365)
chr5 (10-136)||(39688871-39688997)
chr5 (3-51)||(33825291-33825339)
[»] chr4 (27 HSPs)
chr4 (4-136)||(50052396-50052528)
chr4 (3-138)||(6034042-6034177)
chr4 (3-136)||(29239886-29240019)
chr4 (3-138)||(50526138-50526273)
chr4 (3-136)||(41236347-41236480)
chr4 (10-139)||(31910189-31910318)
chr4 (4-137)||(3481653-3481786)
chr4 (3-136)||(42044334-42044467)
chr4 (3-136)||(48183016-48183149)
chr4 (1-136)||(23608235-23608370)
chr4 (3-136)||(480414-480547)
chr4 (1-138)||(11511427-11511564)
chr4 (3-136)||(29234212-29234345)
chr4 (10-138)||(54473507-54473635)
chr4 (4-66)||(48647694-48647756)
chr4 (3-136)||(24995074-24995207)
chr4 (1-102)||(41823916-41824017)
chr4 (1-84)||(28480233-28480316)
chr4 (1-84)||(28481108-28481191)
chr4 (1-84)||(28481983-28482066)
chr4 (10-137)||(40574778-40574905)
chr4 (1-100)||(56300130-56300229)
chr4 (10-136)||(29547933-29548059)
chr4 (10-136)||(47986208-47986334)
chr4 (13-138)||(29535375-29535499)
chr4 (1-136)||(50813857-50813992)
chr4 (9-84)||(53352539-53352614)
[»] chr1 (27 HSPs)
chr1 (3-136)||(51898650-51898783)
chr1 (3-138)||(48716249-48716384)
chr1 (3-137)||(27564702-27564836)
chr1 (2-131)||(44548342-44548471)
chr1 (3-135)||(44453980-44454112)
chr1 (3-138)||(9474843-9474978)
chr1 (3-137)||(47452287-47452421)
chr1 (3-136)||(43132-43265)
chr1 (3-136)||(38632288-38632421)
chr1 (3-136)||(41758805-41758938)
chr1 (1-131)||(26274437-26274564)
chr1 (1-136)||(2581915-2582050)
chr1 (10-136)||(3000319-3000445)
chr1 (10-136)||(32813247-32813373)
chr1 (3-137)||(37649197-37649331)
chr1 (10-136)||(49811501-49811627)
chr1 (4-136)||(50630458-50630590)
chr1 (10-109)||(38595181-38595280)
chr1 (10-136)||(45044534-45044660)
chr1 (8-93)||(48489343-48489428)
chr1 (3-109)||(8346354-8346461)
chr1 (10-136)||(5958974-5959100)
chr1 (3-93)||(11152345-11152435)
chr1 (3-96)||(13414801-13414894)
chr1 (10-138)||(50590974-50591102)
chr1 (10-136)||(37926412-37926538)
chr1 (10-138)||(41608467-41608595)
[»] chr7 (36 HSPs)
chr7 (3-131)||(3784000-3784128)
chr7 (3-137)||(19329841-19329975)
chr7 (10-131)||(32951467-32951588)
chr7 (3-136)||(40957707-40957840)
chr7 (3-138)||(38267038-38267173)
chr7 (10-135)||(35522877-35523002)
chr7 (2-136)||(36208173-36208307)
chr7 (3-136)||(4999481-4999614)
chr7 (3-136)||(8080350-8080483)
chr7 (3-136)||(19436154-19436287)
chr7 (1-68)||(11044246-11044313)
chr7 (26-136)||(3434562-3434672)
chr7 (3-137)||(35137532-35137666)
chr7 (8-136)||(12310906-12311032)
chr7 (3-84)||(38837269-38837350)
chr7 (3-139)||(41423679-41423815)
chr7 (1-136)||(35468820-35468955)
chr7 (10-136)||(7389389-7389515)
chr7 (12-138)||(39255900-39256025)
chr7 (3-84)||(3694419-3694500)
chr7 (27-136)||(36361904-36362013)
chr7 (7-136)||(18207180-18207308)
chr7 (3-84)||(27744276-27744357)
chr7 (27-136)||(36362026-36362135)
chr7 (10-137)||(8238211-8238339)
chr7 (10-137)||(21234400-21234527)
chr7 (13-136)||(26296644-26296767)
chr7 (10-60)||(31735953-31736003)
chr7 (10-136)||(38044197-38044323)
chr7 (10-136)||(40846087-40846213)
chr7 (10-136)||(46033775-46033901)
chr7 (10-95)||(16374798-16374883)
chr7 (1-138)||(32564391-32564528)
chr7 (7-43)||(10343534-10343570)
chr7 (8-50)||(1766753-1766795)
chr7 (14-50)||(45223128-45223164)
[»] scaffold1268 (1 HSPs)
scaffold1268 (3-137)||(896-1030)
[»] scaffold1267 (1 HSPs)
scaffold1267 (3-137)||(896-1030)
[»] scaffold0110 (1 HSPs)
scaffold0110 (10-138)||(8837-8965)
[»] chr6 (18 HSPs)
chr6 (3-136)||(11427616-11427751)
chr6 (3-137)||(17598553-17598687)
chr6 (3-129)||(32869685-32869811)
chr6 (10-136)||(31976248-31976374)
chr6 (10-131)||(22880632-22880753)
chr6 (3-105)||(23128094-23128196)
chr6 (3-136)||(6209432-6209565)
chr6 (3-136)||(29857827-29857960)
chr6 (3-136)||(15832577-15832710)
chr6 (3-138)||(31109367-31109502)
chr6 (8-136)||(12732482-12732610)
chr6 (4-132)||(9379680-9379808)
chr6 (1-83)||(946429-946511)
chr6 (10-138)||(15507998-15508126)
chr6 (8-88)||(30870062-30870142)
chr6 (10-136)||(15990016-15990142)
chr6 (10-136)||(30341334-30341460)
chr6 (3-137)||(31952997-31953131)
[»] chr3 (28 HSPs)
chr3 (3-137)||(53982010-53982144)
chr3 (3-132)||(52629304-52629433)
chr3 (3-138)||(33644198-33644333)
chr3 (2-136)||(49607414-49607548)
chr3 (3-96)||(8076433-8076526)
chr3 (4-136)||(54868863-54868995)
chr3 (3-136)||(33118817-33118951)
chr3 (10-136)||(41189738-41189864)
chr3 (3-136)||(17470405-17470538)
chr3 (9-133)||(26754698-26754822)
chr3 (1-96)||(9563039-9563134)
chr3 (10-136)||(11347896-11348022)
chr3 (10-136)||(51419334-51419460)
chr3 (3-84)||(30801700-30801781)
chr3 (3-96)||(31456729-31456822)
chr3 (9-90)||(48375679-48375760)
chr3 (3-95)||(1758423-1758515)
chr3 (19-137)||(26141515-26141633)
chr3 (1-96)||(36707393-36707484)
chr3 (10-136)||(47531865-47531991)
chr3 (3-136)||(35536626-35536759)
chr3 (10-138)||(20764889-20765017)
chr3 (8-136)||(24699926-24700054)
chr3 (1-136)||(14623804-14623939)
chr3 (1-136)||(35093585-35093720)
chr3 (13-137)||(39670011-39670134)
chr3 (12-50)||(21746164-21746202)
chr3 (26-131)||(48587081-48587186)
[»] scaffold0321 (1 HSPs)
scaffold0321 (4-136)||(10077-10209)
[»] scaffold0237 (1 HSPs)
scaffold0237 (3-136)||(4029-4162)
[»] scaffold0316 (1 HSPs)
scaffold0316 (27-93)||(17097-17163)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 5957965 - 5957835
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||||  ||||| |||||||| ||| ||||||| | |    
T  5957965 ctcatgcactaggaagagagaagaggagaggaaagagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggt 5957866  T
Q  101 atattgccatttaagaatgtctatgtatcat 131  Q
     ||||||||  ||||||||||||||||||||    
T  5957865 gtattgccacctaagaatgtctatgtatcat 5957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 10284598 - 10284731
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||  ||||||||||||  |||||||||||||| ||| |||||||   | |    
T  10284598 catgcactaggaagagagaagatgaaaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgt 10284697  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| || |||||  |||||||||||||||||||    
T  10284698 attgtcacttaagggtgtctatgtatcataactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 37038612 - 37038479
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  37038612 catgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 37038513  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  |||  ||||||||||||||| ||||    
T  37038512 attgccacctaaagatgtctatgtatcattactc 37038479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 34012263 - 34012397
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||  |||||||||||||| ||| ||||||| | | |    
T  34012263 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgt 34012362  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    ||| |||  ||||  |||||||||||||| |||||    
T  34012363 attaccacctaagggtgtctatgtatcattactca 34012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 504088 - 504222
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  504088 catgcattaggaagagagaagatgagagaaaagagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgt 504187  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  ||||  |||||||||||||| |||||    
T  504188 attgccacctaagggtgtctatgtatcattactca 504222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 14548055 - 14547929
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||||| | |    
T  14548055 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgt 14547956  T
Q  103 attgccatttaagaatgtctatgtatc 129  Q
    |||||||  ||||  ||||||||||||    
T  14547955 attgccacctaagggtgtctatgtatc 14547929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 1179907 - 1180040
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||  ||||| |||||||| ||| ||||||| | | |    
T  1179907 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 1180006  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    ||| |||  ||||  |||||||||||||| ||||    
T  1180007 attaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 15197468 - 15197332
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| | |||||||| |||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | |    
T  15197468 ctcatgcatttggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggt 15197369  T
Q  101 atattgccatttaagaatgtctatgtatcataactca 137  Q
     ||||||||  ||||| |||||||||||||| |||||    
T  15197368 gtattgccacctaagagtgtctatgtatcattactca 15197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 15258902 - 15259029
Alignment:
Q  9 ctaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcc 108  Q
    |||||||||||||||| ||||||||||||||| || |||||||| |  |||||||||| | |||||| |||||| | |||||||| |  ||| |||||||    
T  15258902 ctaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgcc 15259001  T
Q  109 atttaagaatgtctatgtatcataactc 136  Q
    || ||||| | |||||||||||||||||    
T  15259002 atctaagagtatctatgtatcataactc 15259029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 43414555 - 43414682
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||| ||||| ||||| |  ||| | |||||||| ||| ||||||| | | | ||||||    
T  43414555 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgcca 43414654  T
Q  110 tttaagaatgtctatgtatcataactca 137  Q
    | |||| |||||||||||||||||||||    
T  43414655 tctaaggatgtctatgtatcataactca 43414682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 23122564 - 23122698
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||| | ||||| |||||||||||| |||| |||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  23122564 catgcattaggaagagagaacaggagagaaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgt 23122663  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    ||||||| |||||  |||||||||||||| |||||    
T  23122664 attgccacttaagggtgtctatgtatcattactca 23122698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 9122318 - 9122237
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||| |||||| ||||||||    
T  9122318 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgt 9122237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 12831180 - 12831047
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  12831180 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 12831081  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| ||  ||||  |||||||||||||| ||||    
T  12831080 attgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 40423908 - 40424045
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||| | ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||| ||||||  ||||| |||||||| ||||||||||| | |    
T  40423908 ctcatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggt 40424007  T
Q  101 atattgccatttaagaatgtctatgtatcataactcaa 138  Q
     ||||||||  ||||  | |||||||||||| ||||||    
T  40424008 gtattgccacctaagggtatctatgtatcattactcaa 40424045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 8841399 - 8841492
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 96  Q
    ||||||||||||| |||||||| |||||||||||||||||| ||||||||||  ||||||||||||  ||| | |||||||| ||| |||||||    
T  8841399 catgcactaggaaaagagaagaggagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaa 8841492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 10621061 - 10621185
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||| ||| | ||| |||  ||||| |||||||| ||| ||||||| | | |||| |||    
T  10621061 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattacca 10621160  T
Q  110 tttaagaatgtctatgtatcataac 134  Q
      |||| ||||||||||||||||||    
T  10621161 cctaaggatgtctatgtatcataac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 40467828 - 40467772
Alignment:
Q  8 actaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtg 64  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  40467828 actaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcgaagtccacgtg 40467772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 15048155 - 15048284
Alignment:
Q  10 taggaagagagaagatgagaggaaa-gagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcc 108  Q
    ||||||||||||||| ||||  ||| ||||||||| ||||||||||  |||| ||| |||  ||||| |||||||| ||| ||||||| | | |||||||    
T  15048155 taggaagagagaagaggagataaaaagagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgcc 15048253  T
Q  109 atttaagaatgtctatgtatcataactcaat 139  Q
    |  |||| |||||||||||||||||||||||    
T  15048254 acctaaggatgtctatgtatcataactcaat 15048284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 44507054 - 44507135
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||| ||||||||||||||||||||| |||||||||||  |||||| |||  ||||||||||||  ||||| ||||||||    
T  44507054 catgcattaggaagagagaagatgagagaaaagagaaagtatgcttgtacggggtccacgtgactacgtgtcagatttttgt 44507135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20074907 - 20074958
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc 52  Q
    |||||| |||||||||||||||||  ||||||||||||||||| ||||||||    
T  20074907 ctcatgaactaggaagagagaagagaagaggaaagagaaagtgtgcttgtgc 20074958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 16056375 - 16056501
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| ||||||  ||| ||||| ||    
T  16056375 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtca 16056474  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| |||| |||||||||||||||    
T  16056475 cataaggatgtttatgtatcataactc 16056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 38229547 - 38229470
Alignment:
Q  17 agagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtca 94  Q
    ||||||||  |||||||||||||| || |||||| | ||||||||||||| | |||||| |||||||| ||| |||||    
T  38229547 agagaagagaagaggaaagagaaaatgtgcttgtacagaatccacgtgaccacatgtcagatttttgtgtgggtgtca 38229470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 14055569 - 14055651
Alignment:
Q  13 gaagagagaagatgagaggaaagagaaagtgcgcttgtg-cggaatccacgtgactatatgtcaaatttttgtatggatgtcaa 95  Q
    ||||||||||||| |||||||||| |||||| |||||||  ||  |||||||||||| |||| | |||||||| ||||||||||    
T  14055569 gaagagagaagatcagaggaaagaaaaagtg-gcttgtgtaggggtccacgtgactacatgtaagatttttgtgtggatgtcaa 14055651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 17443960 - 17443877
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||||||| |||||||||||||  ||| |||||||||||||   ||||| ||  ||||| |||||| |||||| ||||||||    
T  17443960 ctcatgcactgggaagagagaagagaagatgaaagagaaagtgtctttgtgtggggtccacatgactacatgtcagatttttgt 17443877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 32032859 - 32032725
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||| | |||||||||||||||  ||  |||||||||||||  ||||||| | |||||  || | | |||||| |||||||| |||||||| || |||    
T  32032859 ctcatgtattaggaagagagaagagaaggagaaagagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtc-aaggat 32032761  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||||||  ||||  ||| |||||||||||||||    
T  32032760 gtattgccacctaagggtgtttatgtatcataactc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 16383503 - 16383377
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| ||||||  | | ||||||||    
T  16383503 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 16383404  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  ||| |||||||||||||||    
T  16383403 cctaagggtgtttatgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 24307767 - 24307893
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | || ||| |||||||| ||| ||||||  ||| ||||||||    
T  24307767 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgcca 24307866  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  ||| |||||||||||||||    
T  24307867 cctaagggtgtttatgtatcataactc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 42221639 - 42221601
Alignment:
Q  12 ggaagagagaagatgagaggaaagagaaagtgcgcttgt 50  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  42221639 ggaagagagaagatgagatgaaagagaaagtgtgcttgt 42221601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 42354555 - 42354600
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgctt 48  Q
    ||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  42354555 catgcactaggaagagagaagagaagatgaaagagaaagtgtgctt 42354600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 8085637 - 8085551
Alignment:
Q  137 aatccacagtat-actattccaaattcacatgcataagggtacgttgttttgtccttttccaataatgtactgtggatatcaaggtt 222  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8085637 aatccacaatatgactattccaaattcacatgcataagggtacgttcttttgtccttttccaataatgtactgtggatatcaaggtt 8085551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 17473155 - 17473020
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||||| ||| ||||||| | |    
T  17473155 ctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggt 17473056  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||||||| ||||  |||||||||||||| ||||    
T  17473055 gtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 33436065 - 33436200
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||  ||| | |||||||| ||| ||||||| | |    
T  33436065 ctcatgcattaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggt 33436164  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||||||  ||||  |||||||||||||| ||||    
T  33436165 gtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 13438476 - 13438342
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| ||| |    
T  13438476 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgt 13438377  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||| ||  ||||  |||||||||||||| |||||    
T  13438376 attgtcacctaagggtgtctatgtatcattactca 13438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 20700948 - 20700815
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||||||||||||||||||| |||||||||||||||||| |||| |||||  ||||||||||||  ||||| |||||||| | |  |||||| | | |    
T  20700948 catgcactaggaagagagaagaggagaggaaagagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgt 20700849  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  |||| ||||||||||||||| ||||    
T  20700848 attgccacataaggatgtctatgtatcattactc 20700815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 4060818 - 4060682
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||||||||| ||| |||||||| |||| ||||| |||||||| ||||  ||||| |||||||| ||||||||||| | | |    
T  4060818 catgcattaggaagagagaagatgagagaaaaaagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgt 4060719  T
Q  103 attgccatttaagaatgtctatgtatcataactcaat 139  Q
    |||| ||  ||||  |||||||||||||| |||||||    
T  4060718 attgtcacctaagggtgtctatgtatcattactcaat 4060682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 7465700 - 7465835
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| ||||  |||||||||||| ||||||| ||  ||||||||||||  ||||| |||||||| ||| ||||||| | |    
T  7465700 ctcatgcattaggaagagagaagaagagataaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggt 7465799  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||||||| ||||  |||||||||||||| ||||    
T  7465800 gtattgccatctaagggtgtctatgtatcattactc 7465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 28381629 - 28381756
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||  ||||| |||||||| ||| |||| || | | ||||||||    
T  28381629 taggaagagagaagatgagagaaaagagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgcca 28381728  T
Q  110 tttaagaatgtctatgtatcataactca 137  Q
      ||||  |||||||||||||| |||||    
T  28381729 cctaagggtgtctatgtatcattactca 28381756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 19930785 - 19930915
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| ||||| |||||||||||| | ||||||||  ||||| ||||||  ||||| |||||||| ||||||||||| | |    
T  19930785 ctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggt 19930884  T
Q  101 atattgccatttaagaatgtctatgtatcat 131  Q
     ||||||||  ||||  ||||||||||||||    
T  19930885 gtattgccacctaagggtgtctatgtatcat 19930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 28863590 - 28863460
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| ||||  |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | |    
T  28863590 ctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggt 28863491  T
Q  101 atattgccatttaagaatgtctatgtatcat 131  Q
     ||||||||  ||||  ||||||||||||||    
T  28863490 gtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 40701610 - 40701476
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatata 103  Q
    ||||| ||||||||||||||||||||| |||||||||||| | ||||||||  ||||||| ||||  ||||| |||||||| ||| ||||||| | | ||    
T  40701610 atgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgta 40701511  T
Q  104 ttgccatttaagaatgtctatgtatcataactcaa 138  Q
    ||||||  ||||  |||||||||||||| ||||||    
T  40701510 ttgccacctaagggtgtctatgtatcattactcaa 40701476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 9058613 - 9058480
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||| ||||||  ||||| |||||||| ||| ||||||| | | |    
T  9058613 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 9058514  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||| ||||    
T  9058513 attgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 38273116 - 38273242
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||| | ||||| |||||||||||| ||| ||||||  |||| ||| |||  ||||| |||||||| ||| ||| ||| | | ||||||||    
T  38273116 taggaagagagaataggagagaaaagagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgcca 38273215  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
    | |||||||||||||||||||||||||    
T  38273216 tctaagaatgtctatgtatcataactc 38273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 10249349 - 10249482
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| |||||||||| |||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  10249349 catgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgt 10249448  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| ||  ||||  |||||||||||||| ||||    
T  10249449 attgtcacctaagggtgtctatgtatcattactc 10249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 41575273 - 41575142
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc-ggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatga 99  Q
    |||||||| ||||| ||||||||| |||| ||||||||||||| |||||||  ||  ||||| |||| | ||||||||||||||| || |||||||| |     
T  41575273 ctcatgcattaggacgagagaagaggagatgaaagagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaaggg 41575174  T
Q  100 tatattgccatttaagaatgtctatgtatcat 131  Q
    | |||| |||| |||| |||||||||||||||    
T  41575173 tgtattaccatctaaggatgtctatgtatcat 41575142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 30915589 - 30915463
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||  ||||||||||||  ||||| |||||| | |||  |||||| | | ||||||||    
T  30915589 taggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgcca 30915490  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  |||||||||||||| ||||    
T  30915489 cctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 38882778 - 38882913
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaa---tccacgtgactatatgtcaaatttttgtatggatgtcaaatga 99  Q
    |||||| |||||||||| ||||| |||| |||||||||||||||||||||||     ||||||||||||  ||||| |||||||| ||||||||||| |     
T  38882778 catgcattaggaagagataagataagagaaaagagaaagtgcgcttgtgcgggggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaggg 38882877  T
Q  100 tatattgccatttaagaatgtctatgtatcataactc 136  Q
    | ||||||||  ||||  |||||||||||||| ||||    
T  38882878 t-tattgccacctaagggtgtctatgtatcattactc 38882913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 42257319 - 42257193
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||  |||| ||| | |  ||||| |||||| | ||| ||||||||||| ||||||||    
T  42257319 taggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgcca 42257220  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||  ||||||||||||||||||||    
T  42257219 cctaaagatgtctatgtatcataactc 42257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 5574479 - 5574588
Alignment:
Q  27 agaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatgt 126  Q
    |||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||| | ||| ||||||| | | ||||||||  ||||| |||||||||    
T  5574479 agagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgt 5574578  T
Q  127 atcataactc 136  Q
    ||||| ||||    
T  5574579 atcattactc 5574588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 32505615 - 32505748
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| || |||||||||||| ||||| ||| |||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  32505615 catgcattaagaagagagaagaggagagaaaatagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgt 32505714  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| ||  ||||  |||||||||||||| ||||    
T  32505715 attgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 2533247 - 2533124
Alignment:
Q  12 ggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatt 111  Q
    ||||||||||||| ||||  ||||| |||||| ||||||||||  || | ||| |||  ||||| |||||||| ||| ||||||| ||| |||||||| |    
T  2533247 ggaagagagaagaggagataaaagaaaaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccact 2533149  T
Q  112 taagaatgtctatgtatcataactc 136  Q
    |||| ||||||||||||||||||||    
T  2533148 taaggatgtctatgtatcataactc 2533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 33436346 - 33436211
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||| ||||||||||||||||| || ||||||||||||||| ||||||||  | ||||| ||   |  ||||| |||||| | ||| ||||||| | |    
T  33436346 ctcatgaactaggaagagagaagaggataggaaagagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggt 33436247  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||||||| |||| ||||||||||||||| ||||    
T  33436246 gtattgccatctaaggatgtctatgtatcattactc 33436211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 36168962 - 36168836
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||| | ||||| |||||||||||  ||||||||||  |||| ||| | |  |||||||||||||| |||  || ||| ||| ||||| ||    
T  36168962 taggaagagagaataggagagaaaagagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtca 36168863  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
    | |||| ||||||||||||||||||||    
T  36168862 tctaaggatgtctatgtatcataactc 36168836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 45097709 - 45097835
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||||||| ||||||  ||| ||||||||    
T  45097709 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgcca 45097808  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| |||| |||||||||||||||    
T  45097809 cctaaggatgtttatgtatcataactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 40613879 - 40614003
Alignment:
Q  13 gaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccattt 112  Q
    ||||| |||| | ||||| |||||||||||| ||||||||||  |||| ||| | |  ||||| |||||||| ||| ||||||| | | ||||||||  |    
T  40613879 gaagaaagaataggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacct 40613978  T
Q  113 aagaatgtctatgtatcataactca 137  Q
    ||| |||||||||||||||||||||    
T  40613979 aaggatgtctatgtatcataactca 40614003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 27864809 - 27864703
Alignment:
Q  31 gaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatgtatca 130  Q
    ||||||||||||| |||| |||||  ||||||||| ||  ||||| |||||||| ||||||||||| | | ||||||||  ||||  |||||||||||||    
T  27864809 gaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatca 27864710  T
Q  131 taactca 137  Q
    | |||||    
T  27864709 ttactca 27864703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17819969 - 17820106
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| |||| |||||||||| || | ||||| ||  ||||||| || | |||||| |||||||| ||| ||||||  | |    
T  17819969 ctcatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggt 17820068  T
Q  101 atattgccatttaagaatgtctatgtatcataactcaa 138  Q
     ||||||||  ||    |||||||||||||||||||||    
T  17820069 gtattgccacctatagttgtctatgtatcataactcaa 17820106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 38732489 - 38732354
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||| | |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  |||| | |||||| |||||||| ||| ||||||  |||    
T  38732489 ctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggat 38732390  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||| ||  ||||  ||| |||||||||||||||    
T  38732389 gtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 26891478 - 26891604
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  |||||||||||||| || |||||| ||   |||||||||| | |||||| |||||||| ||| |||| |  | | ||||||||    
T  26891478 taggaagagagaagagaagaggaaagagaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgcca 26891577  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  || ||||||||||||||||    
T  26891578 cctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44152062 - 44152012
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 51  Q
    |||||||| ||||||||||||||| |||| ||||||||||||| |||||||    
T  44152062 ctcatgcattaggaagagagaagaggagatgaaagagaaagtgtgcttgtg 44152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 3440106 - 3440052
Alignment:
Q  9 ctaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgt 63  Q
    |||| ||||||||||| ||||||||||||||| || ||||||||||  |||||||    
T  3440106 ctagaaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggtccacgt 3440052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 17823912 - 17823874
Alignment:
Q  12 ggaagagagaagatgagaggaaagagaaagtgcgcttgt 50  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  17823912 ggaagagagaagatgagatgaaagagaaagtgtgcttgt 17823874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 35943859 - 35943992
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||| || |||||||| ||||  ||||| |||||||| ||| ||||||||||| |    
T  35943859 catgcactaggaagagaaaagaggagaggaaagagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgt 35943958  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||||||||    
T  35943959 attgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 33149605 - 33149739
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||  |||||||||||||| ||| ||||||| | | |    
T  33149605 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgt 33149704  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    ||| |||  ||||  |||||||||||||| |||||    
T  33149705 attaccacctaagggtgtctatgtatcattactca 33149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 2740407 - 2740274
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||  ||||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  2740407 catgcattaggaagagagaaggggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 2740308  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  |||| ||||||||||||||| ||||    
T  2740307 attgccacctaaggatgtctatgtatcattactc 2740274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 35785332 - 35785196
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||||||||| |||||||||||| | |||||||| |||||||| ||||  ||||| |||||||| ||| ||||||| | | |    
T  35785332 catgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgt 35785233  T
Q  103 attgccatttaagaatgtctatgtatcataactcaat 139  Q
    |||||||  ||||  |||||||||||||| |||||||    
T  35785232 attgccacctaagggtgtctatgtatcattactcaat 35785196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 36732907 - 36733042
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||| ||||| |||||||| ||| ||||||| | |    
T  36732907 ctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggt 36733006  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     |||||| |  ||||  |||||||||||||| ||||    
T  36733007 gtattgctacctaagggtgtctatgtatcattactc 36733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 13811785 - 13811659
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| |||||  ||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||||||| |    
T  13811785 catgcattaggaagagagaagaggagagagaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgt 13811686  T
Q  103 attgccatttaagaatgtctatgtatc 129  Q
    |||||||  ||||  ||||||||||||    
T  13811685 attgccacctaagggtgtctatgtatc 13811659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 40145538 - 40145406
Alignment:
Q  5 tgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatat 104  Q
    |||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||||||| ||| | | |||    
T  40145538 tgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtat 40145439  T
Q  105 tgccatttaagaatgtctatgtatcataactca 137  Q
    |||||  ||||  |||||||||||||| |||||    
T  40145438 tgccacctaagggtgtctatgtatcattactca 40145406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 14831947 - 14831813
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||  ||| |||||||| |||||||||| |||||||||||||  ||||| |||||| | ||| ||||||| | | |    
T  14831947 catgcattaggaagagagaagaggagaaaaaaaagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgt 14831848  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  ||||| |||||||||||||| |||||    
T  14831847 attgccacctaagagtgtctatgtatcattactca 14831813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 18520849 - 18520979
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| ||||  |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | |    
T  18520849 ctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggt 18520948  T
Q  101 atattgccatttaagaatgtctatgtatcat 131  Q
     ||||||||  ||||  ||||||||||||||    
T  18520949 gtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 31009121 - 31008988
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    ||||||||||||||||||||||  |||||||| |||||||| |||||||||| |||||||||||||  ||||| |||||||| ||| |||  ||  || |    
T  31009121 catgcactaggaagagagaagagaagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgt 31009022  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| ||  |||| |||| |||||||||||||||    
T  31009021 attgtcacctaaggatgtttatgtatcataactc 31008988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 28177901 - 28177774
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||| ||||| ||||| |||||||||||| | ||||||||  |||| ||||| |  ||||| |||||||| ||| ||||||| | | ||||||||    
T  28177901 taggaagagggaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 28177802  T
Q  110 tttaagaatgtctatgtatcataactca 137  Q
      |||| |||||||||||||||||||||    
T  28177801 cctaaggatgtctatgtatcataactca 28177774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 15409584 - 15409710
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| ||||||| |||| ||||||||||  |||| ||| |||  ||||| |||||||| ||| |||||||  || ||||| ||    
T  15409584 taggaagagagaagaggagagaaaagagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtca 15409683  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| ||||||||||||||||||||    
T  15409684 cctaaggatgtctatgtatcataactc 15409710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 6679824 - 6679698
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| ||||||||| || | ||||||||  |||| ||||| |  ||||| |||||||| ||| ||||||| | | ||||||||    
T  6679824 taggaagagagaagaggagagaaaagagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgcca 6679725  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||  ||||||||||||||||||||    
T  6679724 cctaaagatgtctatgtatcataactc 6679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 2177496 - 2177431
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactat 69  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||| || ||||||||| ||||    
T  2177496 atgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtgtgggatccacgtgtctat 2177431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 21370132 - 21370057
Alignment:
Q  8 actaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttg 83  Q
    |||||||||| |||||||||||||||||||||| || | ||||||||  |||||||||| | |||||| |||||||    
T  21370132 actaggaagaaagaagatgagaggaaagagaaaatgtgtttgtgcggggtccacgtgaccacatgtcagatttttg 21370057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 26720642 - 26720515
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  |||| |||||||||||| |||||||||| ||||| ||| | |  ||||| |||||| | | | ||| ||| | | ||||||||    
T  26720642 taggaagagagaagagaagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgcca 26720543  T
Q  110 tttaagaatgtctatgtatcataactca 137  Q
      |||| |||||||||||||||||||||    
T  26720542 cctaaggatgtctatgtatcataactca 26720515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 26990391 - 26990264
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  |||| |||||||||||| |||||||||| ||||| ||| | |  ||||| |||||| | | | ||| ||| | | ||||||||    
T  26990391 taggaagagagaagagaagagaaaagagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgcca 26990292  T
Q  110 tttaagaatgtctatgtatcataactca 137  Q
      |||| |||||||||||||||||||||    
T  26990291 cctaaggatgtctatgtatcataactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 36875586 - 36875645
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactat 69  Q
    ||||||||||||||| ||||  |||||||||||| |||||||||| ||||||||||||||    
T  36875586 taggaagagagaagaggagaaaaaagagaaagtgtgcttgtgcgggatccacgtgactat 36875645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20073481 - 20073532
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc 52  Q
    |||||| ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  20073481 ctcatgaactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgc 20073532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 42414276 - 42414375
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| || || ||||| |||||| ||||||||||  ||||| ||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  42414276 taggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 42414375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 2252142 - 2252268
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| ||||||  | | ||||||||    
T  2252142 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 2252241  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| |||| |||||||||||||||    
T  2252242 cctaaggatgtttatgtatcataactc 2252268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 3921239 - 3921365
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| ||||||  | | ||||||||    
T  3921239 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 3921338  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  ||| |||||||||||||||    
T  3921339 cctaagggtgtttatgtatcataactc 3921365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 39688871 - 39688997
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  ||| |||||  | ||  |||| | || ||| |||||||| ||| ||||||  ||| ||||||||    
T  39688871 taggaagagagaagaaaagaagaaagagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgcca 39688970  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
     |||||  ||| |||||||||||||||    
T  39688971 cttaagggtgtttatgtatcataactc 39688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 33825291 - 33825339
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 51  Q
    ||||||||||||||||||||||  |||  |||||||||||| |||||||    
T  33825291 catgcactaggaagagagaagagaagataaaagagaaagtgtgcttgtg 33825339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 50052396 - 50052528
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatata 103  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | ||    
T  50052396 atgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 50052495  T
Q  104 ttgccatttaagaatgtctatgtatcataactc 136  Q
    ||||||  |||| ||||||||||||||| ||||    
T  50052496 ttgccacctaaggatgtctatgtatcattactc 50052528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 6034177 - 6034042
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||| |||||| |||||||| ||| ||||||| | | |    
T  6034177 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgt 6034078  T
Q  103 attgccatttaagaatgtctatgtatcataactcaa 138  Q
    |||||||  ||||  |||||||||||||| ||||||    
T  6034077 attgccacctaagggtgtctatgtatcattactcaa 6034042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 29240019 - 29239886
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||  ||||||||||||  ||| | |||||||| ||||||||||||| | |    
T  29240019 catgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgt 29239920  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||| ||||    
T  29239919 attgccacctaagggtgtctatgtatcattactc 29239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 50526138 - 50526273
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||| |  ||||| |||||||| ||| ||||||| | | |    
T  50526138 catgcactaggaagagagaagaggagaggaaatagaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgt 50526237  T
Q  103 attgccatttaagaatgtctatgtatcataactcaa 138  Q
    |||||||  |||  ||||||||||||||| ||||||    
T  50526238 attgccacctaaagatgtctatgtatcattactcaa 50526273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 41236480 - 41236347
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||||||||||| | | |    
T  41236480 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgt 41236381  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||| ||||    
T  41236380 attgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 31910318 - 31910189
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||  |||| ||| |||| ||||| |||||||| ||| |||||||   | ||||| ||    
T  31910318 taggaagagagaagatgagagaaaagagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtca 31910219  T
Q  110 tttaagaatgtctatgtatcataactcaat 139  Q
      |||| |||||||||||||||||||||||    
T  31910218 cctaaggatgtctatgtatcataactcaat 31910189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 3481786 - 3481653
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatata 103  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||  ||||||||||||| ||||| |||||||| ||| |||||||   | ||    
T  3481786 atgcactagaaagagagaagatgggaggaaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgta 3481687  T
Q  104 ttgccatttaagaatgtctatgtatcataactca 137  Q
    ||||||  |||   |||||||||||||| |||||    
T  3481686 ttgccacctaaaggtgtctatgtatcattactca 3481653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 42044334 - 42044467
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| |||  || ||| |    
T  42044334 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgt 42044433  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||| ||||    
T  42044434 attgccacctaagggtgtctatgtatcattactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 48183016 - 48183149
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| || |||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  48183016 catgcattaagaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 48183115  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||| ||||    
T  48183116 attgccacgtaagggtgtctatgtatcattactc 48183149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 23608370 - 23608235
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| ||||  |||||||||||| ||||||| ||| | ||||||||||  ||||| |||||||| ||| ||||||||| |    
T  23608370 ctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggt 23608271  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||| ||| ||||  ||||||| |||||| ||||    
T  23608270 gtattgtcatctaagggtgtctatatatcattactc 23608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 480414 - 480547
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||| |||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  480414 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 480513  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| ||  ||||  |||||||||||||| ||||    
T  480514 attgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 11511427 - 11511564
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| || ||||||||||||  |||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||| | ||| ||||||| | |    
T  11511427 ctcatgcattaagaagagagaagagaagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggt 11511526  T
Q  101 atattgccatttaagaatgtctatgtatcataactcaa 138  Q
     ||||||||  ||||  |||||||||||||| ||||||    
T  11511527 gtattgccacctaagggtgtctatgtatcattactcaa 11511564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 29234212 - 29234345
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| ||||||||   | | ||||| | | |    
T  29234212 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgt 29234311  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||| ||||  |||||||||||||| ||||    
T  29234312 attgccatctaagggtgtctatgtatcattactc 29234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 54473507 - 54473635
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| ||||| |||||| ||||||||||  ||||||||||||  ||| | |||||||| ||| ||||||||| | ||||| ||    
T  54473507 taggaagagagaagaggagagaaaagataaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtca 54473606  T
Q  110 tttaagaatgtctatgtatcataactcaa 138  Q
      ||||  |||||||||||||| ||||||    
T  54473607 cctaagggtgtctatgtatcattactcaa 54473635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 48647694 - 48647756
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgac 66  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||    
T  48647694 atgcactaggaagagagaagaggagaggaaagagaaattgtgcttgtgcggagtccacgtgac 48647756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 24995074 - 24995207
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| || |||||||||||| ||||| ||||||||| || ||||||||||  ||||||||||||  |||||||||||| | ||| ||||||| | | |    
T  24995074 catgcattaagaagagagaagaggagagaaaagagaaaatgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgt 24995173  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||| ||||  |||| || |||||| ||||    
T  24995174 attgccatctaagggtgtccatatatcattactc 24995207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 41824017 - 41823916
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |||| |||||||  ||||| |||||||| ||| ||| ||| |||    
T  41824017 ctcatgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaaggat 41823918  T
Q  101 at 102  Q
    ||    
T  41823917 at 41823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28480233 - 28480316
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||||||||||||||||||||| |||| ||| ||||||||| | ||||| ||  ||||| |||||| |||||| ||||||||    
T  28480233 ctcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgt 28480316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28481108 - 28481191
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||||||||||||||||||||| |||| ||| ||||||||| | ||||| ||  ||||| |||||| |||||| ||||||||    
T  28481108 ctcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgt 28481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28481983 - 28482066
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||||||||||||||||||||| |||| ||| ||||||||| | ||||| ||  ||||| |||||| |||||| ||||||||    
T  28481983 ctcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggggtccacatgactacatgtcagatttttgt 28482066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 40574905 - 40574778
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| |||||| ||| ||||| ||  |    ||||| |||||||| ||| ||||||| | | |||| |||    
T  40574905 taggaagagagaagaggagagaaaagagaaagtgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattacca 40574806  T
Q  110 tttaagaatgtctatgtatcataactca 137  Q
      |||| |||||||||||||||||||||    
T  40574805 cctaaggatgtctatgtatcataactca 40574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 56300130 - 56300229
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    ||||| || ||| ||||||||||| |||||||||||||||||| | |||||| | || ||  |||| | |||||| |||||||| |||||||||||||||    
T  56300130 ctcatacattagaaagagagaagaggagaggaaagagaaagtgtgtttgtgcaggattcatatgaccacatgtcagatttttgtgtggatgtcaaatgat 56300229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 29547933 - 29548059
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||| ||||||  ||| ||||| |||||  || | | |||||| |||||||| ||| ||||||  ||| ||||||||    
T  29547933 taggaagagagaagagaagaagaaagaaaaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgcca 29548032  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| |||| |||||||||||||||    
T  29548033 cctaaggatgtttatgtatcataactc 29548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 47986334 - 47986208
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  | | |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||||||||||  ||| ||||||||    
T  47986334 taggaagagagaagagaataagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgcca 47986235  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  ||| |||||||||||||||    
T  47986234 cctaagggtgtttatgtatcataactc 47986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 29535499 - 29535375
Alignment:
Q  13 gaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccattt 112  Q
    |||||||||| | |||| ||||||||||||| | ||||| || ||||||||| | || || || |||||||| |||||  |||  ||| ||||| ||  |    
T  29535499 gaagagagaataagagatgaaagagaaagtgtgtttgtgtgggatccacgtggccatgtg-catatttttgtgtggataccaagagatgtattgtcacct 29535401  T
Q  113 aagaatgtctatgtatcataactcaa 138  Q
    |||| |||||||||||||||||||||    
T  29535400 aagattgtctatgtatcataactcaa 29535375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 50813857 - 50813992
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||| | |||||||||||||||  ||| |||||||||||||  |||||||||  | ||  |||| | |||||| |||||||| ||| ||||||  | |    
T  50813857 ctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggt 50813956  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     |||| |||  ||||| ||| |||||||||||||||    
T  50813957 gtattaccacctaagagtgtttatgtatcataactc 50813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 53352539 - 53352614
Alignment:
Q  9 ctaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||||||||||||| ||||| |||||||||||  ||||||||||  ||||| | ||||  ||||| ||||||||    
T  53352539 ctaggaagagagaagaggagagaaaagagaaagtatgcttgtgcggggtccacttaactacgtgtcagatttttgt 53352614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 51898650 - 51898783
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  51898650 catgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 51898749  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  |||  ||||||||||||||| ||||    
T  51898750 attgccacctaaagatgtctatgtatcattactc 51898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 48716249 - 48716384
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| || || ||||| |||||| ||||||||||  ||||||||||||  ||||| |||||||| ||||||||||||| | |    
T  48716249 catgcattaggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgt 48716348  T
Q  103 attgccatttaagaatgtctatgtatcataactcaa 138  Q
    |||||||  ||||  |||||||||||||| ||||||    
T  48716349 attgccacctaagggtgtctatgtatcattactcaa 48716384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 27564702 - 27564836
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||| ||  ||||| |||||||| ||| ||||||| | | |    
T  27564702 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgt 27564801  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  |||| ||||||||||||||| |||||    
T  27564802 attgccacctaaggatgtctatgtatcattactca 27564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 44548342 - 44548471
Alignment:
Q  2 tcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgata 101  Q
    ||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| | ||||||| |     
T  44548342 tcatgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtg 44548441  T
Q  102 tattgccatttaagaatgtctatgtatcat 131  Q
    ||||||||  |||  |||||||||||||||    
T  44548442 tattgccacctaaagatgtctatgtatcat 44548471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 44454112 - 44453980
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||||||||||||||| |||||| ||||||| || |||||||| || | |||||| |||||||| ||| | ||||  ||| |    
T  44454112 catgcattaggaagagagaagatgagaggaaagaaaaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgt 44454013  T
Q  103 attgccatttaagaatgtctatgtatcataact 135  Q
    ||||||| ||||   ||||||||||||||||||    
T  44454012 attgccacttaaaggtgtctatgtatcataact 44453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 9474843 - 9474978
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| | ||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  9474843 catgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 9474942  T
Q  103 attgccatttaagaatgtctatgtatcataactcaa 138  Q
    |||||||  ||||  |||||||||||||| ||||||    
T  9474943 attgccacctaagggtgtctatgtatcattactcaa 9474978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 47452287 - 47452421
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||  ||| | |||||||| ||| ||||||| | | |    
T  47452287 catgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgt 47452386  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    ||| |||  ||||  |||||||||||||| |||||    
T  47452387 attaccacctaagggtgtctatgtatcattactca 47452421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 43265 - 43132
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||| |||||||| || ||||| |||||||||||| ||||||||||| ||||||||||||  ||||| |||||||| ||| ||||||| ||| |    
T  43265 catgcattagaaagagagaggaggagagaaaagagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgt 43166  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| |   ||||| |||||||||||||| ||||    
T  43165 attgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 38632288 - 38632421
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| ||||| |||||| ||||||||||  ||||||||||||  ||||| |||||||| ||||||| ||| | | |    
T  38632288 catgcattaggaagagagaagaggagagaaaagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgt 38632387  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||| ||||    
T  38632388 attgccacctaagggtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 41758938 - 41758805
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| | ||||||||  |||| |||||||  ||||| |||||||| ||| ||||||| | | |    
T  41758938 catgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgt 41758839  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    ||||||||||||   |||||||||||||| ||||    
T  41758838 attgccatttaatggtgtctatgtatcattactc 41758805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26274564 - 26274437
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||| |||||||||||||||   ||| ||||| ||||||  ||||||| | |||||||||||||| ||||| |||||| | |||||||||||||||    
T  26274564 ctcatgcattaggaagagagaaga---gagaaaagaaaaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgat 26274468  T
Q  101 atattgccatttaagaatgtctatgtatcat 131  Q
     ||||||||  ||||  ||||||||||||||    
T  26274467 gtattgccacataagggtgtctatgtatcat 26274437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 2582050 - 2581915
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||| | ||||||||||||||| ||||| ||| |||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | |    
T  2582050 ctcatgtattaggaagagagaagaggagagaaaaaagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggt 2581951  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||||||  ||||  |||||||||||||| ||||    
T  2581950 gtattgccacctaagggtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 3000445 - 3000319
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||  ||||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  3000445 taggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 3000346  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  ||| |||||||||| ||||    
T  3000345 cctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 32813373 - 32813247
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||  |||| ||||| |  ||||| |||||||| ||| ||| ||| | | ||||||||    
T  32813373 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgcca 32813274  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| ||||||||||||||||||||    
T  32813273 cctaaggatgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 37649331 - 37649197
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||| ||||||| ||||||||||||| |||||||| |  ||||| |||||||| ||| |||||||   | |    
T  37649331 catgcattaggaagagagaagaggagagaaaagggaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgt 37649232  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  |||  ||||||||||||||| |||||    
T  37649231 attgccacctaaagatgtctatgtatcattactca 37649197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 49811501 - 49811627
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||| || |  || |||  ||||| |||||||| ||||||||||||| | ||||| ||    
T  49811501 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtca 49811600  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| |||||||| |||||||||||    
T  49811601 cctaaggatgtctatctatcataactc 49811627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 50630590 - 50630458
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatata 103  Q
    ||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| |  |||| ||| ||    
T  50630590 atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgta 50630491  T
Q  104 ttgccatttaagaatgtctatgtatcataactc 136  Q
    ||||||  ||||  | |||||||||||| ||||    
T  50630490 ttgccacctaagggtatctatgtatcattactc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 38595280 - 38595181
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||  ||||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  38595280 taggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 38595181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 45044534 - 45044660
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  |||| ||||||||| || | ||||||||  |||| ||| ||| |||||| |||||||||||| ||||||||| | ||||||||    
T  45044534 taggaagagagaagagaagagaaaagagaaaatgtgtttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgcca 45044633  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| |  | |||||||||||||||    
T  45044634 cctaaggaaatgtatgtatcataactc 45044660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 48489428 - 48489343
Alignment:
Q  8 actaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtc 93  Q
    ||||||||||||||||| | ||| ||| ||||| || |||||||||| ||||||||||| | |||||| |||||||| ||||||||    
T  48489428 actaggaagagagaagaggtgagaaaatagaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatgtc 48489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 8346354 - 8346461
Alignment:
Q  3 catgcactaggaagagagaa-gatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgata 101  Q
    |||||| |||||||||| || || ||||| |||||||||||| |||||||| |  ||||||||||||  ||||| |||||||| ||| ||||||||| |     
T  8346354 catgcattaggaagagaaaaagaggagagaaaagagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtg 8346453  T
Q  102 tattgcca 109  Q
    ||||||||    
T  8346454 tattgcca 8346461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 5958974 - 5959100
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  |||| | |||||| |||||||| ||| ||||||  | | ||||||||    
T  5958974 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgcca 5959073  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
     |||||  ||| |||||||||||||||    
T  5959074 cttaagggtgtttatgtatcataactc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 11152345 - 11152435
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtc 93  Q
    |||||||| ||||||||||||| ||||||||| |||||| | ||||||||||  || || ||||||  ||||| |||||||| ||||||||    
T  11152345 catgcactgggaagagagaagaggagaggaaaaagaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtc 11152435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 13414894 - 13414801
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 96  Q
    |||||| |||||||||||||||||| || ||||||||| || ||||||| ||  ||||||||||||  ||| | |||||||| ||| |||||||    
T  13414894 catgcattaggaagagagaagatgatagaaaagagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaa 13414801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 50590974 - 50591102
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| ||||||  | | ||||||||    
T  50590974 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 50591073  T
Q  110 tttaagaatgtctatgtatcataactcaa 138  Q
      ||||  ||| |||||||||||||||||    
T  50591074 cctaagggtgtttatgtatcataactcaa 50591102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 37926412 - 37926538
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  |||| ||||||||||||  ||||| ||| ||||| ||| | |  ||||| |||||| | ||| ||| ||| ||| ||||||||    
T  37926412 taggaagagagaagagaagagaaaagagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgcca 37926511  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||  || |||||||||||||||||    
T  37926512 cctaaagatatctatgtatcataactc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 41608467 - 41608595
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  ||||| |||  ||||  || | | |||||| |||||||| ||  ||||||  | | ||||||||    
T  41608467 taggaagagagaagagaagaagaaagagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgcca 41608566  T
Q  110 tttaagaatgtctatgtatcataactcaa 138  Q
      |||| |||| |||||||||||||||||    
T  41608567 cctaaggatgtttatgtatcataactcaa 41608595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 3784128 - 3784000
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||||| ||| ||||||| ||| |    
T  3784128 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgt 3784029  T
Q  103 attgccatttaagaatgtctatgtatcat 131  Q
    |||||||  ||||  ||||||||||||||    
T  3784028 attgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 19329975 - 19329841
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||| ||  ||||| |||||||| ||| ||||||| | | |    
T  19329975 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgt 19329876  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  |||| ||||||||||||||| |||||    
T  19329875 attgccacctaaggatgtctatgtatcattactca 19329841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 32951467 - 32951588
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||| | |||||||| ||||||| ||| ||| ||||| ||    
T  32951467 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtca 32951566  T
Q  110 tttaagaatgtctatgtatcat 131  Q
    | ||||| ||||||||||||||    
T  32951567 tctaagagtgtctatgtatcat 32951588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 40957840 - 40957707
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||||  ||||| |||||||| ||| | |||||   | |    
T  40957840 catgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgt 40957741  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||| |||||||||||||| ||||    
T  40957740 attgccacctaagagtgtctatgtatcattactc 40957707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 38267173 - 38267038
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  38267173 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 38267074  T
Q  103 attgccatttaagaatgtctatgtatcataactcaa 138  Q
    |||| ||  ||||  |||||||||||||| ||||||    
T  38267073 attgtcacataagggtgtctatgtatcattactcaa 38267038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 35523002 - 35522877
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||| |||||  || | |  ||||| |||||||| ||| ||| ||||| | ||||||||    
T  35523002 taggaagagagaagaagagagaaaagagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgcca 35522903  T
Q  110 tttaagaatgtctatgtatcataact 135  Q
     ||||| |||||||||||||||||||    
T  35522902 cttaaggatgtctatgtatcataact 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 36208307 - 36208173
Alignment:
Q  2 tcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgata 101  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||| |  |||||||||| | ||||||  ||||||| ||| ||||||   ||     
T  36208307 tcatgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatg 36208208  T
Q  102 tattgccatttaagaatgtctatgtatcataactc 136  Q
    |||| |||  ||||  |||||||||||||||||||    
T  36208207 tattaccacctaagggtgtctatgtatcataactc 36208173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 4999481 - 4999614
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||  |||||||||||| | ||||||||  ||||||||||||  | ||| |||||||| ||| ||||||| | | |    
T  4999481 catgcattaggaagagagaagaggagataaaagagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgt 4999580  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||| ||||  |||||||||||||| ||||    
T  4999581 attgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 8080350 - 8080483
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||| | | | ||||||| | | |    
T  8080350 catgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgt 8080449  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||| ||||    
T  8080450 attgccacctaagggtgtctatgtatcattactc 8080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 19436154 - 19436287
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| |||||||||| ||||  |||| |||||||||||| |||| ||||| |||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  19436154 catgcattaggaagagaaaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgt 19436253  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| ||  |||| ||||||||||||||| ||||    
T  19436254 attgtcacctaaggatgtctatgtatcattactc 19436287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 11044313 - 11044246
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgacta 68  Q
    |||||||| ||||||||||||||||||||||||||||||||||  |||||||||  ||||||||||||    
T  11044313 ctcatgcattaggaagagagaagatgagaggaaagagaaagtgtacttgtgcggggtccacgtgacta 11044246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 3434672 - 3434562
Alignment:
Q  26 gagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 125  Q
    ||||| |||||||||||| |||||||||| |||||||||||||  |||||  ||||||| ||| ||||||| | | ||||||||  |||| |||||||||    
T  3434672 gagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatg 3434573  T
Q  126 tatcataactc 136  Q
    |||||| ||||    
T  3434572 tatcattactc 3434562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 35137666 - 35137532
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| | ||||||||  ||||||||||||  ||| | |||||||| ||| ||||||| | | |    
T  35137666 catgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgt 35137567  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  ||||  ||||||| |||||| |||||    
T  35137566 attgccacctaagggtgtctatttatcattactca 35137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 12311032 - 12310906
Alignment:
Q  8 actaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgc 107  Q
    ||||||||||||||||| || |||||||| ||| || |||||| | | ||||||||||| | |||||| |||||||||||||| || |  |||||||| |    
T  12311032 actaggaagagagaagaggaaaggaaagataaaatgtgcttgttcaggatccacgtgaccacatgtcagatttttgtatggatatcca--gatatatttc 12310935  T
Q  108 catttaagaatgtctatgtatcataactc 136  Q
    ||  ||||  |||||||||||||||||||    
T  12310934 cacctaagggtgtctatgtatcataactc 12310906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 38837350 - 38837269
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| ||||||||    
T  38837350 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgt 38837269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 41423815 - 41423679
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||||||||||||||||||| |||| |||||||||| |  |||||| ||| ||| ||||||| | |||||| |||||||| |   ||||||  | | |    
T  41423815 catgcactaggaagagagaagaggagatgaaagagaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgt 41423716  T
Q  103 attgccatttaagaatgtctatgtatcataactcaat 139  Q
    ||| |||| |||  |||||||||||||||||||||||    
T  41423715 attaccatctaatgatgtctatgtatcataactcaat 41423679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 35468820 - 35468955
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||| ||||||||||||||||| || ||||||||||||||| | |||||| |  ||||| ||   | || | | |||||| | ||| |||||||||||    
T  35468820 ctcatgaactaggaagagagaagaggataggaaagagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgat 35468919  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||||||| |||| ||||||||||||||| ||||    
T  35468920 gtattgccatctaaggatgtctatgtatcattactc 35468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 7389515 - 7389389
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||  | ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| |||||||   | ||||||||    
T  7389515 taggaagagagagtaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgcca 7389416  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  |||||||||||||| ||||    
T  7389415 cctaagggtgtctatgtatcattactc 7389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 39255900 - 39256025
Alignment:
Q  12 ggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatt 111  Q
    ||||||||||||| |||| |||||||||||||  |||||| ||| |||||||| | |  ||||| |||||||||||| | |||| || | ||||||||      
T  39255900 ggaagagagaagaggagatgaaagagaaagtgttcttgtgtggagtccacgtg-ccacgtgtcagatttttgtatgggtatcaagtggtgtattgccacc 39255998  T
Q  112 taagaatgtctatgtatcataactcaa 138  Q
    ||||  |||||||||||||||||||||    
T  39255999 taaggttgtctatgtatcataactcaa 39256025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 3694500 - 3694419
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||| | ||||||||||||| ||||| |||||||||||| |||||||||| |||||| ||||||  ||||| ||||||||    
T  3694500 catgcattgggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgt 3694419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 36361904 - 36362013
Alignment:
Q  27 agaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatgt 126  Q
    |||| |||||||||||| ||||||| ||  ||||||||||||  ||||| |||||||| ||| ||||||| ||| ||||||||  ||||  |||||||||    
T  36361904 agagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgt 36362003  T
Q  127 atcataactc 136  Q
    ||||| ||||    
T  36362004 atcattactc 36362013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 18207308 - 18207180
Alignment:
Q  7 cactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattg 106  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||| ||  | |||||| | |  ||| | |||||||||||| ||||||  | | |||||    
T  18207308 cactaggaagagagaagaggagatgaaagagaaagtgtgcttgtgtggggttcacgtg-ccacgtgttagatttttgtatgggtgtcaagaggtgtattg 18207210  T
Q  107 ccatttaagaatgtctatgtatcataactc 136  Q
    |||  ||||  |||||||||||||||||||    
T  18207209 ccacctaaggttgtctatgtatcataactc 18207180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 27744276 - 27744357
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||||||||||||||||||||| ||||||| ||||||| || |||| || || ||||||||| | | |||||| ||||||||    
T  27744276 catgcactaggaagagagaagaggagaggatagagaaaatgtgcttatgagggatccacgtggccacatgtcagatttttgt 27744357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 36362135 - 36362026
Alignment:
Q  27 agaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatgt 126  Q
    |||| |||||||||||| ||||||| ||  ||||||||||||  ||||| |||||||| ||| ||||||| ||| |||| |||  ||||  |||||||||    
T  36362135 agagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgt 36362036  T
Q  127 atcataactc 136  Q
    ||||| ||||    
T  36362035 atcattactc 36362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 8238339 - 8238211
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  |||||| |||||| |||||||| ||| ||||||| | | ||||||||    
T  8238339 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgcca 8238240  T
Q  110 ttta-agaatgtctatgtatcataactca 137  Q
      || ||  ||| ||||||||||||||||    
T  8238239 cctacagggtgtttatgtatcataactca 8238211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 21234527 - 21234400
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||| | | |||||| |||||||| || ||||||||||  | || ||| |||  |||||||||||||| ||  ||||||| | | ||||| ||    
T  21234527 taggaagagaggaaaggagaggtaagagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtca 21234428  T
Q  110 tttaagaatgtctatgtatcataactca 137  Q
      |||| |||||||||||||||||||||    
T  21234427 cctaaggatgtctatgtatcataactca 21234400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 26296767 - 26296644
Alignment:
Q  13 gaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccattt 112  Q
    |||||||||||| ||||| ||||||||| |||||||||||||  ||||  || | |  | ||| |||||| | ||||||| ||| | ||||||| ||  |    
T  26296767 gaagagagaagaggagagaaaagagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacct 26296668  T
Q  113 aagaatgtctatgtatcataactc 136  Q
    ||| ||||||||||||||||||||    
T  26296667 aaggatgtctatgtatcataactc 26296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 31736003 - 31735953
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatcca 60  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||| |||||    
T  31736003 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatcca 31735953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 38044323 - 38044197
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||| ||||  ||| |||||||||||||  |||||||||  ||||  || ||| |||||| |||||||| ||||||||||  | | ||||||||    
T  38044323 taggaagagaaaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgcca 38044224  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  ||| |||||||||||||||    
T  38044223 cctaagggtgtttatgtatcataactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 40846087 - 40846213
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||   ||||||||  ||||  | |||| |||| | |||||||| ||||||||||  | | ||||||||    
T  40846087 taggaagagagaagagaagaagaaagagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgcca 40846186  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| |||| |||||||||||||||    
T  40846187 cctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 46033775 - 46033901
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||| |||||||| ||||| ||||||||| |  ||||||||||| | || ||||| |  ||||| |||||| | ||| ||| ||| | | ||||||||    
T  46033775 taggaatagagaagaggagagaaaagagaaaatatgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgcca 46033874  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||||| |||||||||||||||||    
T  46033875 cctaagaatatctatgtatcataactc 46033901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 16374798 - 16374883
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaa 95  Q
    ||||||||||||| | |||| ||||||||| ||| ||||||| |  ||||||||||| |  ||||| |||||||| ||||||||||    
T  16374798 taggaagagagaaaaagagatgaaagagaatgtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtggatgtcaa 16374883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 32564391 - 32564528
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||| | |||||||||||||||  ||| |||||||||||||   ||||||||  ||||  |  | | |||||| |||||||| ||| ||||||  | |    
T  32564391 ctcatgtattaggaagagagaagagaagaagaaagagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggt 32564490  T
Q  101 atattgccatttaagaatgtctatgtatcataactcaa 138  Q
     ||||||||  ||||||||| |||||||||||||||||    
T  32564491 gtattgccacctaagaatgtttatgtatcataactcaa 32564528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 10343534 - 10343570
Alignment:
Q  7 cactaggaagagagaagatgagaggaaagagaaagtg 43  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10343534 cactaggaagagagaagaggagaggaaagagaaagtg 10343570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 1766753 - 1766795
Alignment:
Q  8 actaggaagagagaagatgagaggaaagagaaagtgcgcttgt 50  Q
    |||| |||||||||||| |||||||||||||||||| ||||||    
T  1766753 actacgaagagagaagaggagaggaaagagaaagtgtgcttgt 1766795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 45223164 - 45223128
Alignment:
Q  14 aagagagaagatgagaggaaagagaaagtgcgcttgt 50  Q
    |||||||||||||||| |||||||||| |||||||||    
T  45223164 aagagagaagatgagatgaaagagaaaatgcgcttgt 45223128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 896 - 1030
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||||||  |||||  ||||||| ||||||| ||| | | |    
T  896 catgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgt 995  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  |||  ||||||||||||||| |||||    
T  996 attgccacctaaagatgtctatgtatcattactca 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 896 - 1030
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||||||  |||||  ||||||| ||||||| ||| | | |    
T  896 catgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgt 995  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  |||  ||||||||||||||| |||||    
T  996 attgccacctaaagatgtctatgtatcattactca 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 8837 - 8965
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||||| ||||||||||||| ||  |||||| ||  ||||||||||||| |||||||||||||| | ||||||||||  | ||||| ||    
T  8837 taggaagagagaagatgggaggaaagagaaaatgtacttgtgtggggtccacgtgactatgtgtcaaatttttgtgtagatgtcaaatagtgtattgtca 8936  T
Q  110 tttaagaatgtctatgtatcataactcaa 138  Q
     ||||| |||||||| |||||||||||||    
T  8937 cttaaggatgtctatatatcataactcaa 8965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 11427751 - 11427616
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||||| ||| ||||||| ||| |    
T  11427751 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgt 11427652  T
Q  103 attgccatttaaga--atgtctatgtatcataactc 136  Q
    |||||||  |||||   |||||||||||||| ||||    
T  11427651 attgccacctaagagggtgtctatgtatcattactc 11427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 17598687 - 17598553
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |||||||||| |  ||||| |||||||| ||| ||||||| ||| |    
T  17598687 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgt 17598588  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  ||||  |||||||||||||| |||||    
T  17598587 attgccacctaagggtgtctatgtatcattactca 17598553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 32869811 - 32869685
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  32869811 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 32869712  T
Q  103 attgccatttaagaatgtctatgtatc 129  Q
    |||||||  ||||  ||||||||||||    
T  32869711 attgccacctaagggtgtctatgtatc 32869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 31976374 - 31976248
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||  | || ||||| |  ||||| |||||||| ||| ||| ||| | ||||||||||    
T  31976374 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgcca 31976275  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| ||||||||||||||||||||    
T  31976274 cctaaggatgtctatgtatcataactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 22880632 - 22880753
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| | |||||| ||| ||||||| | | ||||||||    
T  22880632 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgcca 22880731  T
Q  110 tttaagaatgtctatgtatcat 131  Q
      ||||  ||||||||||||||    
T  22880732 cctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 23128094 - 23128196
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| |||||||||| |||| ||||| |||||||||||| ||||||| || |||||||||||||  ||||| |||||||| ||| ||||||| ||| |    
T  23128094 catgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgt 23128193  T
Q  103 att 105  Q
    |||    
T  23128194 att 23128196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 6209432 - 6209565
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||| ||||||  ||||||||||||  || || |||||||| ||  ||||||||  | |    
T  6209432 catgcattaggaagagagaagaggagagaaaagagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgt 6209531  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  ||||  |||||||||||||| ||||    
T  6209532 attgccacctaagggtgtctatgtatcattactc 6209565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 29857960 - 29857827
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| |||||||||||||||  |||| |||||||||||| |||| ||||| |||||||| ||||  ||||| |||||||| ||| ||| ||| | | |    
T  29857960 catgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgt 29857861  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||| |||   |||||||||||||| ||||    
T  29857860 attgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 15832710 - 15832577
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| |||||||| |||||| ||||  ||||||||| ||   |||||| | |||||||||||||  |||||||||||||| ||| ||||||||||| |    
T  15832710 catgcattaggaagatagaagaggagaaaaaagagaaaatgtatttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgattt 15832611  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||| ||  |||   |||||||||||||| ||||    
T  15832610 attgtcacctaaaggtgtctatgtatcattactc 15832577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 31109367 - 31109502
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| |||||||||| |||| ||||| ||||||||||||  ||| |||||  || |||||||||  ||||| |||||||| ||||||||||| | | |    
T  31109367 catgcattaggaagagaaaagaggagagaaaagagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgt 31109466  T
Q  103 attgccatttaagaatgtctatgtatcataactcaa 138  Q
    |||||||  ||||  |||||||  ||||| ||||||    
T  31109467 attgccacctaagggtgtctattaatcattactcaa 31109502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 12732610 - 12732482
Alignment:
Q  8 actaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat-atattg 106  Q
    ||||| ||||||||||| |||| |||||||||| || |||| || || |||||| |  | |  ||||| |||||||| ||| |||||| |||| ||||||    
T  12732610 actagaaagagagaagaggagatgaaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaa-tgattatattg 12732512  T
Q  107 ccatttaagaatgtctatgtatcataactc 136  Q
    ||| ||||||||||||||||||||| ||||    
T  12732511 ccacttaagaatgtctatgtatcattactc 12732482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 9379680 - 9379808
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatata 103  Q
    ||||| |||||||||| ||||  ||| |||||||||| || | ||||| |  |||||| || | |  |||||||||||||||||| ||||||  ||| ||    
T  9379680 atgcattaggaagagaaaagagaagatgaaagagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtcaagggatgta 9379779  T
Q  104 ttgccatttaagaatgtctatgtatcata 132  Q
    ||| ||| |||| ||||||||||||||||    
T  9379780 ttgtcatctaaggatgtctatgtatcata 9379808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 946511 - 946429
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttg 83  Q
    |||||||| ||||||||||||||| ||||| |||||||||||| ||| | |||| ||  |||||||||  ||||| |||||||    
T  946511 ctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgctagagcgggatttacgtgactaggtgtcagatttttg 946429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 15507998 - 15508126
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| ||||||  | | ||||||||    
T  15507998 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 15508097  T
Q  110 tttaagaatgtctatgtatcataactcaa 138  Q
      ||||  ||| |||||||||||||||||    
T  15508098 cctaagggtgtttatgtatcataactcaa 15508126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 30870142 - 30870062
Alignment:
Q  8 actaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatgg 88  Q
    ||||| ||||||||||| ||||||||||||||| || ||||||||||  |||| ||||| | |||| | |||||| |||||    
T  30870142 actagaaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgttagatttttatatgg 30870062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 15990016 - 15990142
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| ||||||  | | ||||||||    
T  15990016 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 15990115  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  ||| |||||||||||||||    
T  15990116 cctaagggtgtttatgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 30341334 - 30341460
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| ||||||  | | ||||||||    
T  30341334 taggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgcca 30341433  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      ||||  ||| |||||||||||||||    
T  30341434 cctaagggtgtttatgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 31952997 - 31953131
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    ||||||||||||||||||||||  ||| ||||||||||||| | ||||| |   ||||| |||  | |||||| |||||| | ||| ||||||  | | |    
T  31952997 catgcactaggaagagagaagagaagatgaaagagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgt 31953096  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  |||| |||||||| |||||| |||||    
T  31953097 attgccacctaaggatgtctatctatcattactca 31953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 53982144 - 53982010
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  53982144 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 53982045  T
Q  103 attgccatttaagaatgtctatgtatcataactca 137  Q
    |||||||  ||||  |||||||||||||| |||||    
T  53982044 attgccacctaagggtgtctatgtatcattactca 53982010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 52629433 - 52629304
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||| |||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  52629433 catgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 52629334  T
Q  103 attgccatttaagaatgtctatgtatcata 132  Q
    |||||||  ||||  |||||||||||||||    
T  52629333 attgccacctaagggtgtctatgtatcata 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 33644333 - 33644198
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||||| | | |    
T  33644333 catgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 33644234  T
Q  103 attgccatttaagaatgtctatgtatcataactcaa 138  Q
    |||||||   |||  |||||||||||||| ||||||    
T  33644233 attgccacccaagggtgtctatgtatcattactcaa 33644198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 49607548 - 49607414
Alignment:
Q  2 tcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgata 101  Q
    ||||||| |||||||||| |||| ||||| |||||||||||| ||||||| || |||||||||||||  ||||| |||||||| ||| ||||||| | |     
T  49607548 tcatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtg 49607449  T
Q  102 tattgccatttaagaatgtctatgtatcataactc 136  Q
    ||||||||  ||||  |||||||||||||| ||||    
T  49607448 tattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 8076526 - 8076433
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 96  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||||  ||| | |||||||| ||| |||||||    
T  8076526 catgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaa 8076433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 54868863 - 54868995
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatata 103  Q
    ||||| ||||||||||||||||||||| |||||||||||| | ||||||||  ||||||| ||||  ||||| |||||||| ||| ||||||| | | ||    
T  54868863 atgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgta 54868962  T
Q  104 ttgccatttaagaatgtctatgtatcataactc 136  Q
    ||||||  ||||  |||||||||||||| ||||    
T  54868963 ttgccacctaagggtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 33118817 - 33118951
Alignment:
Q  3 catgcactaggaagagagaag-atgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgata 101  Q
    ||||||||||| ||||||||| | |||||||||||||||||| | || || || |||||||||||||  |||||||||||||| ||| ||||||| | |     
T  33118817 catgcactagggagagagaaggaggagaggaaagagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtg 33118916  T
Q  102 tattgccatttaagaatgtctatgtatcataactc 136  Q
    ||||| ||  ||||  |||||||||||||||||||    
T  33118917 tattgtcacctaagggtgtctatgtatcataactc 33118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 41189738 - 41189864
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||  |||| ||| | |  |||||||||||| | ||| ||||||||||| ||||||||    
T  41189738 taggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgcca 41189837  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| |||| |||||||||||||||    
T  41189838 cctaaggatgtatatgtatcataactc 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 17470538 - 17470405
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||||||| ||  ||||||||||||  ||||| |||||||| ||| ||| ||| | | |    
T  17470538 catgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgt 17470439  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  |||   |||||||||||||| ||||    
T  17470438 attgccacctaaaggtgtctatgtatcattactc 17470405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 26754822 - 26754698
Alignment:
Q  9 ctaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcc 108  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||  |||| ||||| | |||||| |||||||| |||||||| || | | |||||||    
T  26754822 ctaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgcc 26754723  T
Q  109 atttaagaatgtctatgtatcataa 133  Q
    |  ||||  |||||||| |||||||    
T  26754722 acctaagggtgtctatgaatcataa 26754698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9563134 - 9563039
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 96  Q
    |||||||| ||||||||||||||| ||||| | |||||||||| | |||||| | |||||||||||||  ||||| |||||| |||||||||||||    
T  9563134 ctcatgcattaggaagagagaagaggagagaagagagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaa 9563039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 11347896 - 11348022
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||| ||||| |||||||||||| |||| ||| |  |||| ||| | |  ||||| |||||||| ||||||||||| ||| ||||| ||    
T  11347896 taggaagagagaagaggagagaaaagagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtca 11347995  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
      |||| ||||||||||||||||||||    
T  11347996 cctaaggatgtctatgtatcataactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 51419334 - 51419460
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||| | ||||| |||||||||||| ||||||||||  || | ||| | |  ||||| |||||||| ||| ||| ||| ||| ||||| ||    
T  51419334 taggaagagagaataggagagaaaagagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtca 51419433  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
    | |||| ||||||||||||||||||||    
T  51419434 tctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 30801700 - 30801781
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 84  Q
    |||| ||||||||||||||||||||||||||||||||| || ||||||| ||  ||||  |||||| |||||| ||||||||    
T  30801700 catgtactaggaagagagaagatgagaggaaagagaaaatgtgcttgtgtggggtccatatgactacatgtcatatttttgt 30801781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 31456822 - 31456729
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 96  Q
    |||||| |||||||||| |||| ||||| |||||||||||| ||||||||||  ||||| ||||||  ||||| |||||||| ||| |||||||    
T  31456822 catgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaa 31456729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 48375679 - 48375760
Alignment:
Q  9 ctaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggat 90  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||  |||| ||||| | | |||| ||||||||||||||    
T  48375679 ctaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacacgtcagatttttgtatggat 48375760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 1758423 - 1758515
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaa 95  Q
    |||||| ||||||||||||||| |||| |||||||||| || | ||||| ||| ||||||| || |||||||| |||||||| ||| ||||||    
T  1758423 catgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggagtccacgtaaccatatgtcagatttttgtgtgggtgtcaa 1758515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 26141515 - 26141633
Alignment:
Q  19 agaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaat 118  Q
    |||||| ||||| |||||||||||| ||||||| ||  |||| ||||| |  ||||| |||||||| ||| ||| ||| | | ||||||||  |||| ||    
T  26141515 agaagaggagagaaaagagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggat 26141614  T
Q  119 gtctatgtatcataactca 137  Q
    |||||||||||||||||||    
T  26141615 gtctatgtatcataactca 26141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 36707393 - 36707484
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 96  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||    || |||| |||||||| ||||  ||||| |||||||| |||||||||||    
T  36707393 ctcatgcattaggaagagagaagaggagagaaaagagaaagtg----tgcgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaa 36707484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 47531991 - 47531865
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||| | ||||| |||||||||||| ||||||||||  | ||  || | |  ||||| ||| |||| ||||||| ||| | | ||||||||    
T  47531991 taggaagagagaataggagagaaaagagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgcca 47531892  T
Q  110 tttaagaatgtctatgtatcataactc 136  Q
    | |||| ||||||||||||||||||||    
T  47531891 tctaaggatgtctatgtatcataactc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 35536759 - 35536626
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| |||||||     ||||| |||| |  ||||| |||||| | ||| ||||||||| | |    
T  35536759 catgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtgtaaggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgt 35536660  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||  |||| ||||||||||||||| ||||    
T  35536659 attgccacataaggatgtctatgtatcattactc 35536626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 20764889 - 20765017
Alignment:
Q  10 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 109  Q
    ||||||||||||||||||||| |||||||||||| |||||| |||  |||| ||| | |  ||||| |||||||| ||| ||| |||   | |||| |||    
T  20764889 taggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattacca 20764988  T
Q  110 tttaagaatgtctatgtatcataactcaa 138  Q
      |||| |||||||||| |||||||||||    
T  20764989 cctaaggatgtctatgtctcataactcaa 20765017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 24699926 - 24700054
Alignment:
Q  8 actaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgc 107  Q
    ||||||||||||||||| |||||||||||||||||| | |||| | |  |||||||| | |  || || |||||| | ||| ||||||| | | ||||||    
T  24699926 actaggaagagagaagaggagaggaaagagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgc 24700025  T
Q  108 catttaagaatgtctatgtatcataactc 136  Q
    ||  |||| ||||||||||||||| ||||    
T  24700026 caactaaggatgtctatgtatcattactc 24700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 14623804 - 14623939
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||||||| |||||||||||  ||| ||||||||||||| ||||||| |   ||||| |||  | |||||| |||||| | ||| ||||||  | |    
T  14623804 ctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggt 14623903  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||||||  |||| ||||||||||||||| ||||    
T  14623904 gtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 35093720 - 35093585
Alignment:
Q  1 ctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgat 100  Q
    |||||||||||||||||||||| |  ||| | ||||||||||| ||||||  ||| | ||| |||| | |||||| |||||||  ||||||||||||| |    
T  35093720 ctcatgcactaggaagagagaaaaaaagatgcaagagaaagtgtgcttgtatggagttcacatgaccacatgtcagatttttgcgtggatgtcaaatgtt 35093621  T
Q  101 atattgccatttaagaatgtctatgtatcataactc 136  Q
     ||||| ||  |||   |||||||||||| ||||||    
T  35093620 gtattgtcacctaaagttgtctatgtatcgtaactc 35093585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 39670134 - 39670011
Alignment:
Q  13 gaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccattt 112  Q
    |||||||||||| ||||| |||||| ||||| || ||| ||   ||||| |||  |  |||||||||||| ||| ||||||||  ||||||||||||  |    
T  39670134 gaagagagaagaggagagaaaagaggaagtgtgcgtgtacgaggtccacatgatcacgtgtcaaatttttatatagatgtcaagggatatattgccacat 39670035  T
Q  113 aagaatgtctatgtatcataactca 137  Q
    ||| |||||||||||| ||||||||    
T  39670034 aaggatgtctatgtat-ataactca 39670011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 21746164 - 21746202
Alignment:
Q  12 ggaagagagaagatgagaggaaagagaaagtgcgcttgt 50  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  21746164 ggaagagagaagatgagatgaaagagaaagtgtgcttgt 21746202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 48587081 - 48587186
Alignment:
Q  26 gagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 125  Q
    ||||| ||||||||||||  ||||||||| |||||||||||||  ||||| |||||| | | | ||||||| | | ||||||||  ||||  | ||||||    
T  48587081 gagagaaaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatg 48587180  T
Q  126 tatcat 131  Q
    ||||||    
T  48587181 tatcat 48587186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 10077 - 10209
Alignment:
Q  4 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatata 103  Q
    ||||| ||||||||||||||| ||||| |||||||||||| |||||| ||   ||||||||||||  ||||| |||||| | ||||||||||| ||| ||    
T  10077 atgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgta 10176  T
Q  104 ttgccatttaagaatgtctatgtatcataactc 136  Q
    ||||||  |||   |||||||||||||||||||    
T  10177 ttgccacctaaaggtgtctatgtatcataactc 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 4162 - 4029
Alignment:
Q  3 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 102  Q
    |||||| |||||||||||||||  |||| |||||||||||| |||| ||||| |||||||| ||||  ||||| |||||||| ||| ||| ||| | | |    
T  4162 catgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgt 4063  T
Q  103 attgccatttaagaatgtctatgtatcataactc 136  Q
    |||||||| |||   |||||||||||||| ||||    
T  4062 attgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 17163 - 17097
Alignment:
Q  27 agaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtc 93  Q
    |||||||||||||| || ||||||||||  |||| ||||| | |||||| |||||||| ||||||||    
T  17163 agaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtc 17097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University