View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4814_low_4 (Length: 249)
Name: NF4814_low_4
Description: NF4814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4814_low_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 6207394 - 6207149
Alignment:
| Q |
4 |
gtagattattctgcttacattctgtttgataaaaaatagctcattttgttagccgatggtagatgaatctatagcaaacaacggatagactatctgatta |
103 |
Q |
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| T |
6207394 |
gtagattagtctgcttacattctgtttgataaaaaatagctcattttgttagccgatggtagatgaatctatagcaaataacggatagactatctgatta |
6207295 |
T |
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| Q |
104 |
aaatatttaaagtgtttagtaaaattaatcgataaagttaattacaaaatcttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaaga |
203 |
Q |
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| T |
6207294 |
aaatatttaaagtgtttagtaaaattaatcgataaagttaattacaaaatcttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaaga |
6207195 |
T |
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| Q |
204 |
ttataccgctgcctatttaaatctcccagaagttcaaaaagctctt |
249 |
Q |
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| T |
6207194 |
ttataccgctgcctatttaaatctcccagaagttcaaaaggctctt |
6207149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 6214918 - 6214809
Alignment:
| Q |
141 |
ttaattacaaaat-cttcttaaatgaaatttgcaggtcagtaatatcgacccttgtgctgaagattataccgctgcctatttaaatctcccagaagttca |
239 |
Q |
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| T |
6214918 |
ttaattacaaaattcttcttaaatgaaatttgcaggtcagtaatgtcgacccttgtgctgaagattataccactacctatttaaatctcccagaagttca |
6214819 |
T |
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| Q |
240 |
aaaagctctt |
249 |
Q |
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| T |
6214818 |
aaaggctctt |
6214809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 6215030 - 6214942
Alignment:
| Q |
51 |
gttagccgatggtagatgaatctatagcaaacaacggatagactatctgattaaaatatttaaagtgtttagtaaaattaatcgataaagtt |
142 |
Q |
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| T |
6215030 |
gttagctgatggttgatgaacctataacaaataacggatagactatctgattaa---atttaaagtgttggataaaattaaacaataaagtt |
6214942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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