View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4815-Insertion-1 (Length: 1090)
Name: NF4815-Insertion-1
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-1 |
 | |
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| [»] scaffold0838 (1 HSPs) |
| | |
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| [»] scaffold0832 (1 HSPs) |
| | |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 310 - 911
Target Start/End: Complemental strand, 34311621 - 34311029
Alignment:
| Q |
310 |
agtttataaggtatactaacatatttcatggacatatgttaacatttccgattttttattatctcatccctctcttaattggtcactctatcaactaccc |
409 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34311621 |
agtttataaagtatactaacatatttcatggacatatgttaacatttcccattttttattatctcatccctctcttaatttgtcactctatcaactaccc |
34311522 |
T |
|
| Q |
410 |
ctcatttttcataacaaatgcatacaaatagctttaaaaagtagttttgttgtttttaaaattaggattctaacgcgcaactgtggagactaatctctca |
509 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
34311521 |
ctcatttttcataacaaat----------agctttaaaaaatagttttgttgtttttaaaattaggattctaacgcgcaaatgtagagactaatctctca |
34311432 |
T |
|
| Q |
510 |
agttttgaggaactccaatgaacgacaagttctccctaaaaattttaacaatgttgcatgcccatttctaaattcaaatttagaatctttgttaagttcg |
609 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34311431 |
agttttgaggaactccaatggacgacaagttctccctaaaaattttaacaatattgcatgcccatttctaaattcaaatttaggatctttgttaagttca |
34311332 |
T |
|
| Q |
610 |
aaaagactttatctcatctaaacgctcg-tagatacaaataagattgtttgaatttact---nnnnnnnngtaaattggtttggatagaaaatatttaat |
705 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
34311331 |
aaaagactttatctcatctaaacggtcgatagatacaaataagattgtttaaatttactaacaaaaaaaagtaaattagtttggatagaaaatatttaat |
34311232 |
T |
|
| Q |
706 |
cagtcgtcgcatacaccaaaaagaaattaaaatcgacatcaataaattagcaatttttaattatgccatcacccacgtaattggtcccctgccaaccaac |
805 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
34311231 |
caatcgtcgcataccccaaaaagaaattaaaatcgacatcaat-aattagcaatttttaattatgccatcacccacgtaattggtcccttgccaacc-ac |
34311134 |
T |
|
| Q |
806 |
tcctctcattattcaacaaccttataccgaatacaattgtttttaaggtaacgttaacatgtgatttatgagaacatgtttaaaatgct-taaagggaaa |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
34311133 |
tcctctcattattcaacaaccttataccgaatacaattgtttttaaggtaacgttaaca--tgatttatgagaacatgttaaaaatgctaaaaagggaaa |
34311036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 185 - 306
Target Start/End: Complemental strand, 34311929 - 34311808
Alignment:
| Q |
185 |
ttttgaataatgctacttccagcgaagcatattatcccgagtgcattgcgaacaaccatgattggccactatctcctgatttccaaaaaatatgggtgtt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | |
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|
| T |
34311929 |
ttttgaataatgctacttccagcgaagcatattatcccgagtgcattgcgaacaaccatgattggccactatctcgtgatttccacaaaatatgggtgct |
34311830 |
T |
|
| Q |
285 |
aatgatgtcatcaattttgtaa |
306 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
34311829 |
aatgatgtcatcaattttgtaa |
34311808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 34312151 - 34312002
Alignment:
| Q |
17 |
attttccaacaccgcttatactcagatttggattctcttcaaccatttccctcatattatttgttctatcataatttaagtcattcatttatct-atttt |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||| || |||||||| ||||||| ||||||||||||||| || |||| |
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| T |
34312151 |
attttccaacaccgcttatacccagatttggatcctctccaaccatttcgctcatgttgtttgttctgtcataatctaagtcattcatttacctgttttt |
34312052 |
T |
|
| Q |
116 |
ttctttctttagtgttgttttgtgttcatttatatgccaatcaaccattg |
165 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
34312051 |
ttctttctttggtgttgttttttgttcatttatgagccaatcaaccattg |
34312002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 36922715 - 36922651
Alignment:
| Q |
41 |
gatttggattctcttcaaccatttccctcatattatttgttctatcataatttaagtcattcatt |
105 |
Q |
| |
|
|||||||||||||| |||||||||| ||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
36922715 |
gatttggattctctccaaccatttctctcatgttgtttgttccgccataatttaagtcattcatt |
36922651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 15819967 - 15819844
Alignment:
| Q |
41 |
gatttggattctcttcaaccatttccctcatattatttgttctatcataatttaagtcattcatttatctattttttctttctttagtgttgttttgtgt |
140 |
Q |
| |
|
||||||||| |||| |||||||||| || || || |||||||| |||||| ||||| |||||| | || |||| ||| ||||| ||| |||||| ||| |
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|
| T |
15819967 |
gatttggatcctctccaaccatttctctaatgttgtttgttctgccataatctaagtagttcattcacct-ttttctctctctttggtgctgttttttgt |
15819869 |
T |
|
| Q |
141 |
tcatttatatgccaatcaaccattg |
165 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
15819868 |
tcatttatgaaccaatcaaccattg |
15819844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0838 (Bit Score: 95; Significance: 6e-46; HSPs: 1)
Name: scaffold0838
Description:
Target: scaffold0838; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 189 - 303
Target Start/End: Complemental strand, 3531 - 3417
Alignment:
| Q |
189 |
gaataatgctacttccagcgaagcatattatcccgagtgcattgcgaacaaccatgattggccactatctcctgatttccaaaaaatatgggtgttaatg |
288 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3531 |
gaataatgctacttccagcgaaatatattatcccgagtgcattgcaaacaaacatgattggccactatctcctgatttccacaaaatatgggtgttaatg |
3432 |
T |
|
| Q |
289 |
atgtcatcaattttg |
303 |
Q |
| |
|
||||||||||||||| |
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|
| T |
3431 |
atgtcatcaattttg |
3417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0832 (Bit Score: 95; Significance: 6e-46; HSPs: 1)
Name: scaffold0832
Description:
Target: scaffold0832; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 189 - 303
Target Start/End: Complemental strand, 3562 - 3448
Alignment:
| Q |
189 |
gaataatgctacttccagcgaagcatattatcccgagtgcattgcgaacaaccatgattggccactatctcctgatttccaaaaaatatgggtgttaatg |
288 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3562 |
gaataatgctacttccagcgaaatatattatcccgagtgcattgcaaacaaacatgattggccactatctcctgatttccacaaaatatgggtgttaatg |
3463 |
T |
|
| Q |
289 |
atgtcatcaattttg |
303 |
Q |
| |
|
||||||||||||||| |
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|
| T |
3462 |
atgtcatcaattttg |
3448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 29308849 - 29308725
Alignment:
| Q |
41 |
gatttggattctcttcaaccatttccctcatattatttgttctatcataatttaagtcattcatttatctattttttctttctttagtgttgttttgtgt |
140 |
Q |
| |
|
||||||||| |||| |||||||||| || || || ||||| || |||||| |||| |||| ||| | ||||||| ||| ||||||||| |||||| ||| |
|
|
| T |
29308849 |
gatttggatcctctccaaccatttctcttatgttgtttgtcctgccataatctaagccatttattcacctattttatctctctttagtgctgttttttgt |
29308750 |
T |
|
| Q |
141 |
tcatttatatgccaatcaaccattg |
165 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
29308749 |
tcatttatcaaccaatcaaccattg |
29308725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 498 - 568
Target Start/End: Complemental strand, 3398994 - 3398924
Alignment:
| Q |
498 |
actaatctctcaagttttgaggaactccaatgaacgacaagttctccctaaaaattttaacaatgttgcat |
568 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||||| ||||||| |||| ||||||| ||||||||| |
|
|
| T |
3398994 |
actaatctctcgagttttatggaactcaaatgaacgacaaattctccccaaaagttttaacgatgttgcat |
3398924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 485 - 573
Target Start/End: Complemental strand, 28099383 - 28099295
Alignment:
| Q |
485 |
cgcaactgtggagactaatctctcaagttttgaggaactccaatgaacgacaagttctccctaaaaattttaacaatgttgcatgccca |
573 |
Q |
| |
|
|||||||| ||||||||||| ||| || || ||||||| |||| ||||||| |||||||||||| |||||||| || |||||||||| |
|
|
| T |
28099383 |
cgcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatgccca |
28099295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 9411430 - 9411311
Alignment:
| Q |
44 |
ttggattctcttcaaccatttccctcatattatttgttctatcataatttaagtcattcatttatctattttttctttctttagtgttgttttgtgttca |
143 |
Q |
| |
|
|||||| |||| |||||||||| ||||| || ||||| || |||||| |||| |||| ||| | ||||||| ||| ||||||||||||||| |||| | |
|
|
| T |
9411430 |
ttggatcctctccaaccatttctctcatgttgtttgtcctgccataatctaagccatttattcacctattttctct--ctttagtgttgttttttgttta |
9411333 |
T |
|
| Q |
144 |
tttatatgccaatcaaccattg |
165 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
9411332 |
tttatgaaccaatcaaccattg |
9411311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 14270892 - 14270768
Alignment:
| Q |
41 |
gatttggattctcttcaaccatttccctcatattatttgttctatcataatttaagtcattcatttatctattttttctttctttagtgttgttttgtgt |
140 |
Q |
| |
|
||||||||| |||| |||||||||| |||| || ||||| || |||||| |||| ||| ||| | ||||||| ||| |||||| || |||||| ||| |
|
|
| T |
14270892 |
gatttggatcctctccaaccatttctttcatgttgtttgtcctgccataatctaagctatttattcacctattttctctctctttaatgctgttttttgt |
14270793 |
T |
|
| Q |
141 |
tcatttatatgccaatcaaccattg |
165 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
14270792 |
tcatttatgaaccaatcaaccattg |
14270768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 371931 - 372051
Alignment:
| Q |
41 |
gatttggattctcttcaaccatttccctcatattatttgttctatcataatttaagtcattcatttatctattttttctttctttagtgttgttttgtgt |
140 |
Q |
| |
|
||||||||| |||| |||| ||||| ||||| |||||||| || |||||| ||||||||| ||| | |||||| | | ||||||||| || ||| ||| |
|
|
| T |
371931 |
gatttggatcctctccaactatttctctcatgttatttgtcctgccataatctaagtcatttattcacatattttctttctctttagtgctgctttttgt |
372030 |
T |
|
| Q |
141 |
tcatttatatgccaatcaacc |
161 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
372031 |
tcatttatgaaccaatcaacc |
372051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 22288340 - 22288291
Alignment:
| Q |
520 |
aactccaatgaacgacaagttctccctaaaaattttaacaatgttgcatg |
569 |
Q |
| |
|
||||| |||| |||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
22288340 |
aactcaaatggacgacaagttctccctaagagttttaacattgttgcatg |
22288291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 49422016 - 49422065
Alignment:
| Q |
56 |
caaccatttccctcatattatttgttctatcataatttaagtcattcatt |
105 |
Q |
| |
|
||||| |||| ||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
49422016 |
caaccttttctctcatgttatttgttgtatcataatctaagtcattcatt |
49422065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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