View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4815-Insertion-10 (Length: 745)

Name: NF4815-Insertion-10
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4815-Insertion-10
NF4815-Insertion-10
[»] chr1 (9 HSPs)
chr1 (119-588)||(50151526-50151995)
chr1 (203-660)||(43013041-43013511)
chr1 (8-100)||(50151394-50151486)
chr1 (8-101)||(43012855-43012944)
chr1 (668-745)||(43013790-43013866)
chr1 (119-177)||(43012982-43013040)
chr1 (271-370)||(14998737-14998840)
chr1 (509-588)||(14999123-14999202)
chr1 (604-651)||(50152024-50152071)
[»] chr3 (3 HSPs)
chr3 (119-566)||(34020855-34021307)
chr3 (42-101)||(34020758-34020817)
chr3 (542-588)||(7945013-7945059)
[»] chr2 (1 HSPs)
chr2 (148-374)||(11762269-11762496)
[»] chr7 (1 HSPs)
chr7 (542-586)||(27922535-27922579)
[»] chr8 (1 HSPs)
chr8 (507-584)||(30151914-30151991)
[»] chr6 (1 HSPs)
chr6 (531-584)||(7694702-7694755)


Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 119 - 588
Target Start/End: Original strand, 50151526 - 50151995
Alignment:
Q  119 ctcatagaccgtgaaattttaattaccctctcaatactcacaacacaagcgacaaactcaaggttgtgctaccatagagggttatatctctgttttctat 218  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50151526 ctcatagaccttgaaattttaattaccctctcaatactcacaacacaagtgacaaactcaaggttgtgctaccatagagggttatatctctgttttctat 50151625  T
Q  219 ggctttttgttatcattttggcacatgctaggtaatatggtaagcnnnnnnngagttttgaattttctcactctaaaagaaacgatgaaacttgctttag 318  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50151626 ggctttatgttaacattttggcacatgcttggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaacgatgaaacttgctttag 50151725  T
Q  319 ccttgcaaatggtgtttctataatatagagaagtagtggcggggattgggagcttgggtcagccatctgcagtagaaaattagaatatgatatgattttg 418  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50151726 ccttgcaaatggcgtttctataatatagagaagtagtggcagggattgggagcttgggtcagccatctgcagtagaaaattagaatatgatatgattttg 50151825  T
Q  419 ggttttttgggagttgagattgtgaatggagctctttatggttcttacaatttgatgattagtattaagcattgaaacactttgaaagagaaagagaaag 518  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50151826 ggttttttgggagttgagattgtgaatggagctctttatagttcttacaatttgaagattagtattaagcattgaaacactttgaaagagaaagagaaag 50151925  T
Q  519 cttgcaatgatggagagatgaagttgatgggttgtatttgatgcagatggactatgataagaattggtag 588  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50151926 cttgcaatgatagagatatgaagttgatgggttgtatttgatgtagatggactatgataagaattggtag 50151995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 203 - 660
Target Start/End: Original strand, 43013041 - 43013511
Alignment:
Q  203 tatctctgttttctatggctttttgttatcattttggcacatgctaggtaatatggtaagcnnnnnnngagttttgaattttctcactctaaaagaaacg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||    
T  43013041 tatctctgttttctatggctttttgttatcattttggcacatgcttggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaacg 43013140  T
Q  303 atgaaacttgctttagccttgcaaatggtgtttctataatatagagaagtagtggcggggattgggagcttgggtcagccatctgcagtagaaaattaga 402  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43013141 atgaaacttgctttagccttgcaaatggcgtttctataatatagagaagtagtggcggggattgggagtttgggtcagccatctgcagtagaaaattaga 43013240  T
Q  403 atatgatatgattttgggttttttgggagttgagattgtgaatggagctctttatggttcttacaatttgatgattagtattaagcattgaaacactttg 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43013241 atatgatatgattttgggttttttgggagttgagattgtgaatggagctctttatggttcttacaatttgatgattagtattaagcattgaaacactttg 43013340  T
Q  503 aaagagaaagagaaagcttgcaatgatggagagatgaagttgatgggttgtatttgatgcagatggactatgataagaattggtag-------------a 589  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |    
T  43013341 aaagagaaagagaaagcttgcaatgatagagagatgaagttgatgggttgtatttgatgcagatggactatgataagaattggtagctgatttaatctaa 43013440  T
Q  590 ttattgnnnnnnnnttggtccatcttgaaccaaatctgcaaaggtccaagctaaatgacaccctctaacaa 660  Q
    |  |||        ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43013441 tggttgaaaaaaaattggtccatcttgaaccaaatctgcaaaggtccaagctaaatggcaccctctaacaa 43013511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 50151394 - 50151486
Alignment:
Q  8 cttaccattataataaacaagattttaaaagtcatagagttgatgggttcgaatatcacgattttaaaagtctaacgttaattaatcaaatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50151394 cttaccattataataaacaagattttaaaagtcatagagttgatgggttcgaatatcacgattttaaaagtctaacgttaattaatcaaatag 50151486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 43012855 - 43012944
Alignment:
Q  8 cttaccattataataaacaagattttaaaagtcatagagttgatgggttcgaatatcacgattttaaaagtctaacgttaattaatcaaatagt 101  Q
    ||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43012855 cttaccattataataaacaa--ttttaaaagtca--gagttgatgggttcgaatatcacgattttaaaagtctaacgttaattaatcaaatagt 43012944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 668 - 745
Target Start/End: Original strand, 43013790 - 43013866
Alignment:
Q  668 agaatggttgaaactttggtggatgaagctacaatataccaatgtatctttagtggttacattggaaagattgagata 745  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43013790 agaatggttgaaactttggtggatgaagctacaatataccaatgtatctttagtggttacattgg-aagattgagata 43013866  T

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Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 43012982 - 43013040
Alignment:
Q  119 ctcatagaccgtgaaattttaattaccctctcaatactcacaacacaagcgacaaactc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43012982 ctcatagaccgtgaaattttaattaccctctcaatactcacaacacaagtgacaaactc 43013040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 271 - 370
Target Start/End: Original strand, 14998737 - 14998840
Alignment:
Q  271 gagttttgaattttctcactctaaaagaaacgatgaaa-cttgctttagccttgcaaatggtgtttctataatatagagaagtagt---ggcggggattg 366  Q
    |||||||||||||| ||| | |||||||||| |||||| ||||||| ||||||||||||||||||||||| |||| ||||||||||   ||| |||||||    
T  14998737 gagttttgaattttttcattgtaaaagaaaccatgaaaacttgcttcagccttgcaaatggtgtttctatgatatggagaagtagtagtggcagggattg 14998836  T
Q  367 ggag 370  Q
    ||||    
T  14998837 ggag 14998840  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 509 - 588
Target Start/End: Original strand, 14999123 - 14999202
Alignment:
Q  509 aaagagaaagcttgcaatgatggagagatgaagttgatgggttgtatttgatgcagatggactatgataagaattggtag 588  Q
    |||||||| |||||||| |||  | |||||||||||||   || |||||| ||||||||||||||| |||||||||||||    
T  14999123 aaagagaatgcttgcaacgataaacagatgaagttgatatattttatttggtgcagatggactatggtaagaattggtag 14999202  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 651
Target Start/End: Original strand, 50152024 - 50152071
Alignment:
Q  604 ttggtccatcttgaaccaaatctgcaaaggtccaagctaaatgacacc 651  Q
    ||||||||||||  ||||||||||||||| ||||||||||||| ||||    
T  50152024 ttggtccatcttagaccaaatctgcaaagatccaagctaaatggcacc 50152071  T

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Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 119 - 566
Target Start/End: Original strand, 34020855 - 34021307
Alignment:
Q  119 ctcatagaccgtgaaattttaattaccctctcaatactcacaacacaagcgacaaactcaaggttgtgctaccatagagggttatatctctgttttctat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34020855 ctcatagaccgtgaaattttaattaccctctcaatactcacaacacaagtgacaaactcaaggttgtgctaccatagagggttatatctctgttttctat 34020954  T
Q  219 ggctttttgttatcattttggcacatgctaggtaatatggtaagcnnnnnnngagttttgaattttctcactctaaaagaaac-gatgaaacttgcttta 317  Q
    |||||| |||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  34020955 ggctttgtgttatcattttggcacatgcttggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaaaagatgaaacttgcttta 34021054  T
Q  318 gccttgcaaatggtgtttctataatatagagaagtagtggcggggattgggagcttgggtcagccatctgcagtagaaaattagaatatgatatgatttt 417  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34021055 gccttgcaaatggcgtttctataatatagagaagtagtggcagggattgggagcttgggtcagccatctgcagtagaaaattagaatatgatatgatttt 34021154  T
Q  418 gggttttttgggagttgagattgtgaatg----gagctctttatggttcttacaatttgatgattagtattaagcattgaaacactttgaaagagaaaga 513  Q
    |||||||||||||||||||| ||||||||    ||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  34021155 gggttttttgggagttgagaatgtgaatggagcgagctctttgtagttcttacaatttgatgatcagtatttagcattgaaacactttgaaagagaaaga 34021254  T
Q  514 gaaagcttgcaatgatggagagatgaagttgatgggttgtatttgatgcagat 566  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  34021255 gaaagcttgcaatgatagagagatgaagttgatggattgtatttgatgcagat 34021307  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 34020758 - 34020817
Alignment:
Q  42 tagagttgatgggttcgaatatcacgattttaaaagtctaacgttaattaatcaaatagt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34020758 tagagttgatgggttcgaatatcacgattttaaaagtctaacgttaattaatcaaatagt 34020817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 7945013 - 7945059
Alignment:
Q  542 ttgatgggttgtatttgatgcagatggactatgataagaattggtag 588  Q
    ||||||||||||||||||||  |||||||||| |||| |||||||||    
T  7945013 ttgatgggttgtatttgatgtggatggactataataaaaattggtag 7945059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 374
Target Start/End: Original strand, 11762269 - 11762496
Alignment:
Q  148 ctcaatactcacaacacaagcgacaaactcaaggttgtgctaccatagagggttatatctctgttttctatggcttttt---gttatcattttggcacat 244  Q
    |||||||||||||||| ||| | | | |||||||||||||  | ||| |||||| ||||| ||||||||||   |||||   |||||| |||||||||||    
T  11762269 ctcaatactcacaacaaaagtggccagctcaaggttgtgcagcaatatagggttgtatctttgttttctatttttttttctcgttatctttttggcacat 11762368  T
Q  245 gctaggtaatatggtaagcnnnnnnngagttttgaattttctcactctaaaagaaacgatgaaacttgctttagccttgcaaatggtgtttctataatat 344  Q
    ||| |||||   | || ||       |||| |||  |||||||| | |||||||||| |||||| ||||||    |||||||||||||||||||| ||||    
T  11762369 gcttggtaac--gataggctttctttgagtattgggttttctcattgtaaaagaaacaatgaaatttgcttccttcttgcaaatggtgtttctattatat 11762466  T
Q  345 agagaagtagtggcggggattgggagcttg 374  Q
    |||||||| ||  | |||||||| ||||||    
T  11762467 agagaagttgtaacagggattggaagcttg 11762496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 586
Target Start/End: Complemental strand, 27922579 - 27922535
Alignment:
Q  542 ttgatgggttgtatttgatgcagatggactatgataagaattggt 586  Q
    |||||||||||||||||||  |||||||| |||||||||||||||    
T  27922579 ttgatgggttgtatttgatatagatggaccatgataagaattggt 27922535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 584
Target Start/End: Complemental strand, 30151991 - 30151914
Alignment:
Q  507 agaaagagaaagcttgcaatgatggagagatgaagttgatgggttgtatttgatgcagatggactatgataagaattg 584  Q
    ||||||||| || |||| ||||  ||||||||||||||||| |||  ||||| ||  ||||||||| |||||||||||    
T  30151991 agaaagagagagattgctatgacagagagatgaagttgatgagtttgatttggtgtggatggactacgataagaattg 30151914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 584
Target Start/End: Complemental strand, 7694755 - 7694702
Alignment:
Q  531 gagagatgaagttgatgggttgtatttgatgcagatggactatgataagaattg 584  Q
    ||||||||||||||||| |||  ||||| ||  |||||||||||||||||||||    
T  7694755 gagagatgaagttgatgagttagatttggtgtggatggactatgataagaattg 7694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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