View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4815-Insertion-11 (Length: 696)
Name: NF4815-Insertion-11
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 8 - 693
Target Start/End: Original strand, 37640180 - 37640864
Alignment:
| Q |
8 |
ctcccagcttacccccaccccctcctcactccccaaaaccggcgtcattattatcggcgccggcctcgccggcttagctgctgcaacccacctcaactcc |
107 |
Q |
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| T |
37640180 |
ctcccagcttacccccaccccctcctcactccccaaaaccggcgtcattataatcggcgccggcctcgccggcttagctgctgcaacccacctcaactcc |
37640279 |
T |
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| Q |
108 |
cagaacatccctttcgtcctcctcgaatcatccaacgccgtcggtggccgcgtccgtaccgacattgtcgacggcttcctccttgaccgtggcttccaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37640280 |
cagaacatccctttcgtcctcctcgaatcatccaacgccgtcggtggccgcgtccgtaccgacattgttgacggcttcctccttgaccgtggcttccaaa |
37640379 |
T |
|
| Q |
208 |
tctttatcacagcttatccagaagctcaaaaactcctcaattaccaatccttaaacctccaaaaattctactccggtgctaaaatcttctacaacggcca |
307 |
Q |
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| T |
37640380 |
tctttatcacagcttatccagaagctcaaaaactcctcaattaccaatccttaaacctccaaaaattctactccggtgctaaaatcttctacaacggcca |
37640479 |
T |
|
| Q |
308 |
attccacaccgtcgctgatccacttcgccatttcttcgattcggcaaaatccctaaccaatcccatcggttctgtcttcaacaaattactcatcggaacc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37640480 |
attccacaccgtcgctgatccacttcgccatttcttcgattcggcaaaatccctaaccaatcccatcggttctgtcttcgacaaattactcatcggaacc |
37640579 |
T |
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| Q |
408 |
accagaatcggtgtccttacaaaatccgatgaacaaattctcaccgcagaagaaattcccacagttgacttactgaagaagctaggattttcagattcga |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
37640580 |
accagaatcggtgtccttacaaaatccgatgaacaaattctcaccgcagaagaaattcccacaatcgacttactgaagaagctaggattttcagattcga |
37640679 |
T |
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| Q |
508 |
tcatcggaagattcttccgaccgtttttcgggggaatcttcttcgatccagaactcgaaacaacttctagattattcgatttcatcttcaagtgtctcgc |
607 |
Q |
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| T |
37640680 |
tcatcggaagattcttccgaccgtttttcgggggaatcttcttcgatccagaactcgaaacaacttctagattattcgatttcatcttcaagtgtctcgc |
37640779 |
T |
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| Q |
608 |
tcttggagaaaatactcttccggcgaaagggatgtcagcgattccggaacaatttagcggcgaggttaccgtcagattcaaccttg |
693 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
37640780 |
tcttggagaaaatactcttccggcgaaagggatatcagcgattccggaacaa-ttagcggcgaggttaccgtcagattcaatcttg |
37640864 |
T |
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