View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4815-Insertion-12 (Length: 625)
Name: NF4815-Insertion-12
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-12 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Original strand, 38171981 - 38172598
Alignment:
| Q |
8 |
gttaggaccaccatttgcatgtggaaatggtggattcacgttagttgaaccaaaaaagctttgtctagtgcatggaagaggtgaagaatgaccatgggca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38171981 |
gttaggaccaccatttgcatgtggaaatggtggattcacgttagttgaaccaaaaaagctttgtctagtgcatggaagaggtgaagaatgaccatgggca |
38172080 |
T |
|
| Q |
108 |
gcaccaataaagccttgcccagtggcctgaataggtggacaatgaccatgagcaacagatgacccggcatgtgcaatagacattgtagtgatggaaccat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38172081 |
gcaccaataaagccttgcccagtggcctgaataggtggacaatgaccatgagcaacagatgacccggcatgtgcaatagacattgtagtgatggaaccat |
38172180 |
T |
|
| Q |
208 |
cttttagaggaacttgcttcctgttgttttccatcctcctgtcggtactttgattgtttcgacctcttttattttgttttaccagtctcttgtactcggc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38172181 |
cttttagaggaacttgcttcctgttgttttccatcctcctgtcggtactttgattgtttcgacctcttttattttgttttaccagtctcttgtactcggc |
38172280 |
T |
|
| Q |
308 |
ctctttctcgtcatccgaaaattcttcttcatcagacacctcctcatcgtactgaccagatgcatcgtatcctttcttgtaaaggtccttgttatttagc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38172281 |
ctctttctcgtcatccgaaaattcttcttcatcagacacctcctcatcgtactgaccagatgcatcgtatcctttcttgtaaaggtccttgttatttagc |
38172380 |
T |
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| Q |
408 |
acatgatttacaaattctgcaacaaaagaaatcaaagttccctcacggatcccttctggaacttctttttcagaattgtatcgcacaacataataaggat |
507 |
Q |
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| T |
38172381 |
acatgatttacaaattctgcaacaaaagaaatcaaagttccctcacggatcccttctggaacttctttttcagaattgtatcgcacaacataataaggat |
38172480 |
T |
|
| Q |
508 |
tttttacttgaccaaagacctcatcaattaagccaagaggtgtttgcctttcagtaatccaaagaatggaaccctcattaagagggtcatgcttctccac |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38172481 |
tttttacttgaccaaagacctcatcaattaagccaagaggtgtttgcctttcagtaatccaaagaatggaaccctcattaagagggtcatgcttctccac |
38172580 |
T |
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| Q |
608 |
cccttcaacaatgactcg |
625 |
Q |
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| T |
38172581 |
cccttcaacaatgactcg |
38172598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 185 - 505
Target Start/End: Original strand, 48240790 - 48241100
Alignment:
| Q |
185 |
agacattgtagtgatggaaccatcttttagaggaacttgcttcctgttgttttccatcctcctg-tcggtactttgattgtttcgacctcttttattttg |
283 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |||||||||| |||||||||||||| || |
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| T |
48240790 |
agacattgtagggatggaaccatcttttagaggaacttgctttctgttgttttccatcctcttgatcggtattttgattgttacgacctcttttattctg |
48240889 |
T |
|
| Q |
284 |
ttttaccagtctcttgtactcggcctctttctcgtcatccgaaaattcttcttcatcagacacctcctcatcgtactgaccagatgcatcg----tatcc |
379 |
Q |
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|||| |||||||| |||||| ||||||||||| ||||||||||||||| |||||||| ||||| | ||||||||| |||| |
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| T |
48240890 |
ttttcgcagtctctggtactcagcctctttctcatcatccgaaaattctgcttcatca---------------tactgcctggatgcatcgatcacatcc |
48240974 |
T |
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| Q |
380 |
tttcttgtaaaggtccttgttatttagcacatgatttacaaattctgcaacaaaagaaatcaaagttccctcacggatcccttctggaacttctttttca |
479 |
Q |
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| T |
48240975 |
tttcttgtaaaggtccttgttattaagcacatgatttacaaattccgcaacaaaggaaatcaaagttccctcacggatcccttctggcacttctttttca |
48241074 |
T |
|
| Q |
480 |
gaattgtatcgcacaacataataagg |
505 |
Q |
| |
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| T |
48241075 |
gagttgtatctcacagcataataagg |
48241100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 178 - 373
Target Start/End: Original strand, 48244643 - 48244839
Alignment:
| Q |
178 |
gtgcaatagacattgtagtgatggaaccatcttttagaggaacttgcttcctgttgttttccatcctcctg-tcggtactttgattgtttcgacctcttt |
276 |
Q |
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|||||| || |||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||| | ||||| |||||||||| |||||||||| |
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| T |
48244643 |
gtgcaacaggcattgtagggatggaaccatcttttagaggaatttgctttatgttattttccatcctctcgatcggtgttttgattgttacgacctcttt |
48244742 |
T |
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| Q |
277 |
tattttgttttaccagtctcttgtactcggcctctttctcgtcatccgaaaattcttcttcatcagacacctcctcatcgtactgaccagatgcatc |
373 |
Q |
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|||| |||||| ||||||||||||||| ||||||||||| |||||| |||||||| ||||||| |||||||| ||||| |||||||| |||||||| |
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| T |
48244743 |
tattatgtttttgcagtctcttgtactcagcctctttctcatcatccaaaaattctgcttcatcggacacctcttcatcatactgaccggatgcatc |
48244839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 407 - 592
Target Start/End: Original strand, 48244839 - 48245012
Alignment:
| Q |
407 |
cacatgatttacaaattctgcaacaaaagaaatcaaagttccctcacggatcccttctggaacttctttttcagaattgtatcgcacaacataataagga |
506 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||| |
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| T |
48244839 |
cacataatttacaaattctgcaacaaaggaaatcaaagttccctcacggatccctt------------tttcagagttgtatctcacagcataataagga |
48244926 |
T |
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| Q |
507 |
ttttttacttgaccaaagacctcatcaattaagccaagaggtgtttgcctttcagtaatccaaagaatggaaccctcattaagagg |
592 |
Q |
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||||| ||||| ||||||| |||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
48244927 |
tttttaacttgtccaaagatctcatcaattaaaccaagcgatgtttgcctttcagtaatccagagaatggaaccctcaataagagg |
48245012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 298 - 623
Target Start/End: Original strand, 30878 - 31206
Alignment:
| Q |
298 |
tgtactcggcctctttctcgtcatccgaaaattcttcttcatcagacacctcctcatcgtactgaccagatgcatcgtatcctttcttgtaaaggtcctt |
397 |
Q |
| |
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|||| |||||||||||||| ||||| ||||| ||| |||||||| ||| ||| ||||| ||| |||||||||||| || |||||| ||||||| ||||| |
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| T |
30878 |
tgtattcggcctctttctcatcatctgaaaactctacttcatcaaacaactcttcatcatacgcaccagatgcatcatagcctttcctgtaaagatcctt |
30977 |
T |
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| Q |
398 |
gttatttagcacatgatttacaaattctgcaacaaaagaaatcaaagtt---ccctcacggatcccttctggaacttctttttcagaattgtatcgcaca |
494 |
Q |
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| T |
30978 |
attattgagcacatgttcagcaaattctggaacacatgagaccaaagttgttcccccttggatccccgccgggacatcattttcagaattatatctcaca |
31077 |
T |
|
| Q |
495 |
acataataaggattttttacttgaccaaagacctcatcaattaagccaagaggtgtttgcctttcagtaatccaaagaatggaaccctcattaagagggt |
594 |
Q |
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| T |
31078 |
acataatacgggtttttgactggtccaaagatttcatcaactaaacctagtggtttgcggctttcagtcagccacagaacagaaccctcattaagaggtt |
31177 |
T |
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| Q |
595 |
catgcttctccaccccttcaacaatgact |
623 |
Q |
| |
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||||||||||||| ||||| ||||||||| |
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| T |
31178 |
catgcttctccactccttccacaatgact |
31206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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