View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4815-Insertion-13 (Length: 546)
Name: NF4815-Insertion-13
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-13 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 314 - 546
Target Start/End: Original strand, 37876681 - 37876915
Alignment:
| Q |
314 |
atcactctaagtctattaacaaataatgacacaaacaatcattcatgcgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg |
413 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37876681 |
atcactctaagtctattaacaaataatggcacaaacaatcattcttgtgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg |
37876780 |
T |
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| Q |
414 |
taaacaggtcattccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccacggcattcagattgctaaaagaata--atgctagcaa |
511 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
37876781 |
taaacaggtcgttccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccatggcattcagattgctaaaagaataatatgctagcaa |
37876880 |
T |
|
| Q |
512 |
cttcaaactattcctaagacccttaaagccaccca |
546 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37876881 |
cttcaaactattcctaagacccttaaagccaccca |
37876915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 155 - 299
Target Start/End: Original strand, 37876490 - 37876636
Alignment:
| Q |
155 |
ttgatctagatt--gctttcttttctctgctctatttcagtactctcatgttctcccttttctcaaagccttctttataataaacattttgtgccaaatt |
252 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37876490 |
ttgatctagattttgctttcttttctctgctctatttcagtactctcatgttctcccttttctcaaagccttctttataataaacattttgtgccaaatt |
37876589 |
T |
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| Q |
253 |
tcccattttaaaatgagtcaaaggagtaacgaatcaatattcttgca |
299 |
Q |
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| T |
37876590 |
tcccattttaaaatgagtcaaaggagtaacaaatcaatattcttgca |
37876636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 37876300 - 37876454
Alignment:
| Q |
8 |
cttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcctgatttta---tattattattat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |
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| T |
37876300 |
cttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagggaagttttatgaatgcctgattttatattattattattat |
37876399 |
T |
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| Q |
105 |
agattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat |
159 |
Q |
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| T |
37876400 |
agattttgagacatgaaatgtctaaaagactccaatggtaaattatagttttgat |
37876454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 314 - 546
Target Start/End: Complemental strand, 23895000 - 23894766
Alignment:
| Q |
314 |
atcactctaagtctattaacaaataatgacacaaacaatcattcatgcgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg |
413 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23895000 |
atcactctaagtctattaacaaataatggcacaaacaatcattcttgtgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg |
23894901 |
T |
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| Q |
414 |
taaacaggtcattccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccacggcattcagattgctaaaagaata--atgctagcaa |
511 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
23894900 |
taaacaggtcgttccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccatggcattcagattgctaaaagaataatatgctagcaa |
23894801 |
T |
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| Q |
512 |
cttcaaactattcctaagacccttaaagccaccca |
546 |
Q |
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| T |
23894800 |
cttcaaactattcctaagacccttaaagccaccca |
23894766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 155 - 299
Target Start/End: Complemental strand, 23895191 - 23895045
Alignment:
| Q |
155 |
ttgatctagatt--gctttcttttctctgctctatttcagtactctcatgttctcccttttctcaaagccttctttataataaacattttgtgccaaatt |
252 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23895191 |
ttgatctagattttgctttcttttctctgctctatttcagtactctcatgttctcccttttctcaaagccttctttataataaacattttgtgccaaatt |
23895092 |
T |
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| Q |
253 |
tcccattttaaaatgagtcaaaggagtaacgaatcaatattcttgca |
299 |
Q |
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| T |
23895091 |
tcccattttaaaatgagtcaaaggagtaacaaatcaatattcttgca |
23895045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 23895381 - 23895227
Alignment:
| Q |
8 |
cttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcctgattttatattatta---ttat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| |
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| T |
23895381 |
cttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagggaagttttatgaatgcctgattttatattattattattat |
23895282 |
T |
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| Q |
105 |
agattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat |
159 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23895281 |
agattttgagacatgaaatgtctaaaagactccaatggtaaattatagttttgat |
23895227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 18106966 - 18107053
Alignment:
| Q |
8 |
cttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcctgattttatatt |
96 |
Q |
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||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| || | |||||| ||| ||||||||||||| |
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| T |
18106966 |
cttcatattgctcagtttaactattaagctttatgatataggtgttatgcgcataaaagggaagctttatg-atgtctgattttatatt |
18107053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 18138786 - 18138725
Alignment:
| Q |
98 |
ttattatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat |
159 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||| |
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| T |
18138786 |
ttattatagattttgagacatggaatctctaaaagactccaatgctaaattgtagttttgat |
18138725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 18097565 - 18097626
Alignment:
| Q |
98 |
ttattatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat |
159 |
Q |
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||||||||||||||||||||||| |||||||| ||||| ||| | ||||||||||||||||| |
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| T |
18097565 |
ttattatagattttgagacatggaatgtctaatagacttcaacgctaaattatagttttgat |
18097626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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