View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4815-Insertion-14 (Length: 516)

Name: NF4815-Insertion-14
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4815-Insertion-14
NF4815-Insertion-14
[»] chr3 (9 HSPs)
chr3 (95-516)||(8260709-8261137)
chr3 (95-293)||(8265675-8265874)
chr3 (95-395)||(8258602-8258915)
chr3 (101-192)||(8350129-8350220)
chr3 (95-192)||(8352867-8352964)
chr3 (101-172)||(8252975-8253046)
chr3 (97-169)||(8356436-8356508)
chr3 (305-352)||(8265901-8265949)
chr3 (97-169)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 95 - 516
Target Start/End: Original strand, 8260709 - 8261137
Alignment:
Q  95 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 8260808  T
Q  195 gaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatatcatatg 294  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260809 gaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatatcatatg 8260908  T
Q  295 agatctgataatagtcaaattgcttggtgagcaaggaaaacataaagggaccactttgg-------nnnnnnnnnnttcatttgtggctgctttgggcac 387  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||                  | ||||||||||||||||  |||    
T  8260909 agatatgataatagtcaaattgcttggtgaccaaggaaaacataaagggaccactttggaaaaaaaaataaaaaaaataatttgtggctgctttgaacac 8261008  T
Q  388 ttgttaattgaaaacaaaatgttgtttcgtttgtctttttcattgcttatttggtgcgtgcaatatggttatgaggaacaagtcaaggtctaagtatgat 487  Q
    |||||||||  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8261009 ttgttaattagaatcaaaatgttgtttcgtttgtctttttcattgcttatttggtgcctgcaatatggttatgaggaacaagtcaaggtctaagtatgat 8261108  T
Q  488 tgaccatcgccaaacaagtttctttaaga 516  Q
    ||||||||||||||||| |||||||||||    
T  8261109 tgaccatcgccaaacaattttctttaaga 8261137  T

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Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 95 - 293
Target Start/End: Original strand, 8265675 - 8265874
Alignment:
Q  95 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 193  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8265774  T
Q  194 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatatcatat 293  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||||||    
T  8265775 tgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttatagacatcatat 8265874  T

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Target: chr3; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 95 - 395
Target Start/End: Original strand, 8258602 - 8258915
Alignment:
Q  95 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 193  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8258701  T
Q  194 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttatag------ 284  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |   |||||||||||||||||||          
T  8258702 tgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttatagagttat 8258801  T
Q  285 ------atatcatatgagatctgataatagtcaaattgcttggtgagcaaggaaaacataaa-gggaccactttggnnnnnnnnnnttcatttgtggctg 377  Q
          |||||||||||||| |||| ||||||||||||||||| || |||| | ||| |||| ||||||||||||           ||||||||||||||    
T  8258802 catttcatatcatatgagatatgatgatagtcaaattgcttggcgaccaagcagaacctaaatgggaccactttg----aaaaaaattcatttgtggctg 8258897  T
Q  378 ctttgggcacttgttaat 395  Q
    |||||| |||||||||||    
T  8258898 ctttggacacttgttaat 8258915  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
Q  101 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 192  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8350129 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact 8350220  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 8352867 - 8352964
Alignment:
Q  95 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 192  Q
    |||||||||| |||||||||| |||||||   ||||| | ||||||||| | || || ||||||||||||||||||||||||||||||  ||||||||    
T  8352867 atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact 8352964  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
Q  101 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 172  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8252975 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
Q  97 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 169  Q
    ||||||||||||||||||||||||||| | ||||  | ||||||||| | ||||| | | |||||||||||||    
T  8356436 cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 8265901 - 8265949
Alignment:
Q  305 atagtcaaattgcttggtgagcaaggaaaacataaa-gggaccactttg 352  Q
    ||||||||||||||||| || |||||| |||||||| ||||||||||||    
T  8265901 atagtcaaattgcttggcgaccaaggagaacataaatgggaccactttg 8265949  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 8360609 - 8360681
Alignment:
Q  97 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 169  Q
    ||||||||||||||||||||||| ||| | ||||  | || |||||| | ||||| | |||||||||||||||    
T  8360609 cataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

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