View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4815-Insertion-15 (Length: 369)
Name: NF4815-Insertion-15
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 366
Target Start/End: Complemental strand, 34746632 - 34746271
Alignment:
| Q |
8 |
atattgactagtgttctacctcctatatttgcagtcagaattgtgtaatttttcatcgaacttactttat---cttatggacatagtctagatatattgt |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34746632 |
atattgactagagttctacctcctatatttgcagtcagaattgtgtaatttttcatcaaatttactttataatcttatggacatagtctagatatattgc |
34746533 |
T |
|
| Q |
105 |
cctgacagcaacaattatactacaattttttgtagtttgtgaaacattcttttgcagatattcgtccatttaaaatgttaagacatttggaactaagctt |
204 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34746532 |
cctaacagcaacaattatactacaattttttgtagtttgtgaaacattcttttgcagatattcgtccatttaaaatgttaagacatttggaactaagctt |
34746433 |
T |
|
| Q |
205 |
tgttggctgcaataatttgttaggcatactcctaaagtcaccctgcctggagactctaattttagaggtttgtcgctgacaatttctctatttagaaaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34746432 |
tgttggctgcaataatttgttaggcatactcctaaagtcaccctgcctggagactctaattttagaggtttgtcgctgacaatttctctatttaaaaaat |
34746333 |
T |
|
| Q |
305 |
atgttagtatatcaggtatttttgtttcaaaaaatctactttggtttttccacatgttttcc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34746332 |
atgttagtatatcaggtatttttgtttcaaaaaatctactatggtttttccacatgttttcc |
34746271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 149 - 341
Target Start/End: Complemental strand, 34758987 - 34758794
Alignment:
| Q |
149 |
cattcttttgcagatattcgtccatttaaaatgttaagacatttggaactaagctttgttggctgcaataatttgttaggcatactcctaaagtcaccct |
248 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| | ||||||||||||| || |||||||||| | ||||| |||||||||| |||| || || | |
|
|
| T |
34758987 |
cattcttttgcagatattcctccatttggaatgttgcgtcatttggaactaaactctgttggctgcgaatatttgagaggcatactcttaaattcgccat |
34758888 |
T |
|
| Q |
249 |
gcctggagactctaattttagaggtttgtcgctgacaatttctctattt-agaaaatatgttagtatatcaggtatttttgtttcaaaaaatct |
341 |
Q |
| |
|
| ||| |||||||||||||| |||||||| ||| ||||||| |||| | |||| |||||| || || ||||| ||||||| |||||||||| |
|
|
| T |
34758887 |
gtctgaagactctaattttacaggtttgtaattgagaatttctaaatttcaaaaaacatgttaatacatgaggtagttttgttccaaaaaatct |
34758794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 278
Target Start/End: Complemental strand, 34750986 - 34750854
Alignment:
| Q |
144 |
tgaaacattcttttgcagatattcgtccatttaaaatgttaagacatttggaactaagctttgttggctgcaataatttgttaggcatactcctaaagtc |
243 |
Q |
| |
|
|||| |||||||||| |||||||| ||||||| || ||| || ||| ||||||||| || |||||||||||| ||||||||| ||||||| || |||| |
|
|
| T |
34750986 |
tgaaccattcttttgaagatattcctccatttggaaggttgagtcatctggaactaaactctgttggctgcaaatatttgttagccatactcttacagtc |
34750887 |
T |
|
| Q |
244 |
accctgcctggagactctaattttagaggtttgtc |
278 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
34750886 |
accctgtctggaga--ctaattttacaggtttgtc |
34750854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 34751096 - 34751024
Alignment:
| Q |
48 |
ttgtgtaatttttcatcgaacttactttatcttatggacatagtctagatatattgtcctgacagcaacaatt |
120 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
34751096 |
ttgtgtaatttttcattaaatttactttatcttatggacatggtctctatatattgtcctaacacaaacaatt |
34751024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 34755471 - 34755434
Alignment:
| Q |
312 |
tatatcaggtatttttgtttcaaaaaatctactttggt |
349 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
34755471 |
tatatgagatatttttgtttcaaaaaatctactttggt |
34755434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University