View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4815-Insertion-19 (Length: 205)

Name: NF4815-Insertion-19
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4815-Insertion-19
NF4815-Insertion-19
[»] chr5 (3 HSPs)
chr5 (11-189)||(10299774-10299952)
chr5 (8-82)||(1649546-1649620)
chr5 (16-45)||(7585019-7585048)
[»] chr6 (3 HSPs)
chr6 (8-82)||(25326827-25326901)
chr6 (8-82)||(26159362-26159436)
chr6 (8-61)||(31947317-31947370)
[»] chr4 (10 HSPs)
chr4 (8-82)||(3976443-3976517)
chr4 (8-77)||(27654478-27654547)
chr4 (8-72)||(5994978-5995042)
chr4 (13-59)||(56328697-56328743)
chr4 (8-67)||(26001441-26001500)
chr4 (8-54)||(8567798-8567844)
chr4 (8-54)||(8586541-8586587)
chr4 (11-65)||(24106760-24106814)
chr4 (8-61)||(16318421-16318474)
chr4 (8-61)||(51904726-51904779)
[»] chr7 (5 HSPs)
chr7 (8-77)||(23434697-23434766)
chr7 (24-65)||(2911774-2911815)
chr7 (9-72)||(35549761-35549824)
chr7 (16-77)||(39523576-39523637)
chr7 (17-65)||(2520646-2520694)
[»] chr2 (8 HSPs)
chr2 (8-65)||(19193613-19193670)
chr2 (8-82)||(42669840-42669914)
chr2 (8-48)||(19953425-19953465)
chr2 (14-62)||(20458927-20458975)
chr2 (35-82)||(35523379-35523426)
chr2 (16-69)||(43400142-43400195)
chr2 (8-65)||(31494221-31494276)
chr2 (8-65)||(3804597-3804654)
[»] chr8 (6 HSPs)
chr8 (9-77)||(38091372-38091440)
chr8 (8-71)||(45524986-45525049)
chr8 (8-48)||(37927583-37927623)
chr8 (16-62)||(2471370-2471416)
chr8 (13-65)||(1088432-1088484)
chr8 (10-77)||(20545933-20546000)
[»] chr1 (9 HSPs)
chr1 (23-65)||(7548749-7548791)
chr1 (7-65)||(25010006-25010064)
chr1 (16-72)||(28274792-28274848)
chr1 (16-62)||(31602075-31602121)
chr1 (8-77)||(18953274-18953343)
chr1 (8-81)||(18157035-18157108)
chr1 (35-80)||(18473647-18473692)
chr1 (16-65)||(33234002-33234051)
chr1 (8-45)||(44807130-44807167)
[»] chr3 (5 HSPs)
chr3 (12-65)||(214048-214100)
chr3 (8-65)||(46575961-46576018)
chr3 (10-82)||(7791824-7791896)
chr3 (7-65)||(5452169-5452227)
chr3 (26-62)||(10817446-10817482)
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-77)||(296837-296898)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 10299952 - 10299774
Alignment:
Q  11 cattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatttctctcctcgtaatgtagtatccattttgatca 110  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10299952 cattgggttcatccaataagagaatgagtgttgaagagagtgttgaaaagagagtatccctagcatttctctcctcgtaatgtagtatccattttgatca 10299853  T
Q  111 ccggattaaaataaaccgacatgatcttattagttatttgcacgctatattcatgaatattttaacacaaacacccatg 189  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10299852 ccgaattaaaataaaccgacatgatcttattagttatttccacgctatattcatgaatattttaacacaaacacccatg 10299774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 1649620 - 1649546
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatttctct 82  Q
    |||||||  ||||||||||||||| | ||||||||  |||| |||||||||||||||| |||||| |||| ||||    
T  1649620 atacattaatttcatccaataagatagtgagtgttagagagagtgttgaaaagagagtgtccctaacattcctct 1649546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 7585048 - 7585019
Alignment:
Q  16 gtttcatccaataagagaatgagtgttgaa 45  Q
    ||||||||||||||||||||||||||||||    
T  7585048 gtttcatccaataagagaatgagtgttgaa 7585019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 25326901 - 25326827
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatttctct 82  Q
    |||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||| ||||    
T  25326901 atacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtccctatcattactct 25326827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 26159436 - 26159362
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatttctct 82  Q
    |||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||| ||||    
T  26159436 atacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtccctatcattactct 26159362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 31947317 - 31947370
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaaga 61  Q
    ||||||| ||||||||||||||||||||||  || |||||  ||||||||||||    
T  31947317 atacatttgtttcatccaataagagaatgaacgtcgaagaaagtgttgaaaaga 31947370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 3976443 - 3976517
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatttctct 82  Q
    |||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||||| |||||| ||| |||||    
T  3976443 atacattggttttatcaaataagagaatgagtgttgaagagagtgttgaaaatagagtgtccctaacatctctct 3976517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 27654547 - 27654478
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatt 77  Q
    ||||||| |||| ||||||||||||||||||||||  |||| |||||||||||||||| |||||| ||||    
T  27654547 atacattagttttatccaataagagaatgagtgttagagagagtgttgaaaagagagtgtccctagcatt 27654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 5994978 - 5995042
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatcccta 72  Q
    ||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||| | ||||||    
T  5994978 atacattagttttatccaataagagaatgagtgttaaagagagtgttgaaaagagaatgtcccta 5995042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 56328743 - 56328697
Alignment:
Q  13 ttggtttcatccaataagagaatgagtgttgaagagggtgttgaaaa 59  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  56328743 ttggtttcatccgataagagaatgagtgttaaagagagtgttgaaaa 56328697  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 26001500 - 26001441
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtat 67  Q
    |||||||  ||| ||||||||| ||||||| |||||||||| ||||||||||||| ||||    
T  26001500 atacattacttttatccaataaaagaatgaatgttgaagagagtgttgaaaagagtgtat 26001441  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 8567844 - 8567798
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgtt 54  Q
    ||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  8567844 atacaatggtttcatgcaataagagaatgaatgttgaagagagtgtt 8567798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 8586587 - 8586541
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgtt 54  Q
    ||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  8586587 atacaatggtttcatgcaataagagaatgaatgttgaagagagtgtt 8586541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 24106760 - 24106814
Alignment:
Q  11 cattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||| |||||||||||||||||| || |||||  |||| ||||||||||||||||    
T  24106760 cattagtttcatccaataagagagtgggtgttagagagagtgttgaaaagagagt 24106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 16318474 - 16318421
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaaga 61  Q
    |||||||| ||| ||||||||||||||||||||||||| |   |||||||||||    
T  16318474 atacattgattttatccaataagagaatgagtgttgaacacactgttgaaaaga 16318421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 51904726 - 51904779
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaaga 61  Q
    |||||||| ||||||| ||||||||||||||||   ||||| ||||||||||||    
T  51904726 atacattgatttcatctaataagagaatgagtgacaaagagagtgttgaaaaga 51904779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 23434766 - 23434697
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatt 77  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||  |||| |||||| ||||    
T  23434766 atacattggttttatccaataagagaatgagtgttgaagagagtgttgaaaaaggagtgtccctagcatt 23434697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 2911815 - 2911774
Alignment:
Q  24 caataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  2911815 caataagagaatgagtgttgaagatagtgttgaaaagagagt 2911774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 35549761 - 35549824
Alignment:
Q  9 tacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatcccta 72  Q
    ||||||||||||||||||||| || || |||||| | | | |||||||||||||||| ||||||    
T  35549761 tacattggtttcatccaataaaaggataagtgttaaggggagtgttgaaaagagagtgtcccta 35549824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 39523637 - 39523576
Alignment:
Q  16 gtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatt 77  Q
    |||||||||||||| ||||||||||||  | || |||||||||||||||  |||||| ||||    
T  39523637 gtttcatccaataaaagaatgagtgttagacagagtgttgaaaagagagcgtccctatcatt 39523576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 2520694 - 2520646
Alignment:
Q  17 tttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    ||||| ||||||| ||| ||||||||| |||| ||||||||||||||||    
T  2520694 tttcacccaataaaagagtgagtgttggagagagtgttgaaaagagagt 2520646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 19193613 - 19193670
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  19193613 atacattggttttatccaataagagaatgagtgttcaagagagtgttgaaaagagagt 19193670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 42669840 - 42669914
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatttctct 82  Q
    |||||||| ||  ||||||||||| |||||||||||||||| |||||||||||||||  |||||| |||| ||||    
T  42669840 atacattgattctatccaataagaaaatgagtgttgaagagagtgttgaaaagagagcgtccctaacattcctct 42669914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 19953465 - 19953425
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagag 48  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  19953465 atacattggtttcatccaataaaagaatgagtgttgaagag 19953425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 20458975 - 20458927
Alignment:
Q  14 tggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagag 62  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  20458975 tggtttcatccaataagagaatgagtgtttaagagagtgttgaagagag 20458927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 35523426 - 35523379
Alignment:
Q  35 tgagtgttgaagagggtgttgaaaagagagtatccctaccatttctct 82  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||    
T  35523426 tgagtgttgaagagagtgttgaaaagagagtgtccctagcatttctct 35523379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 43400195 - 43400142
Alignment:
Q  16 gtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatcc 69  Q
    |||||||||||||||| | ||||||||  |||| ||||||||||||||||||||    
T  43400195 gtttcatccaataagaaagtgagtgttagagagagtgttgaaaagagagtatcc 43400142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 31494276 - 31494221
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||||||  ||||||||||||||||| ||||||||  |||| ||||||||||||||||    
T  31494276 atacattattttcatccaataagagagtgagtgtt--agagagtgttgaaaagagagt 31494221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 3804654 - 3804597
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||||||| ||||||||||||| ||| ||| |||| ||||| ||||||||||| ||||    
T  3804654 atacattgatttcatccaataaaagagtgaatgttaaagagagtgttgaaaagtgagt 3804597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 38091440 - 38091372
Alignment:
Q  9 tacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatt 77  Q
    ||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||| ||| ||||    
T  38091440 tacattggttttatccaataagagaatgagtgttcaagagagtgttgaaaagagaatatctctagcatt 38091372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 45524986 - 45525049
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccct 71  Q
    |||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  45524986 atacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtccct 45525049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 37927583 - 37927623
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagag 48  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  37927583 atacattggtttcatccaacaagagaatgagtgttgaagag 37927623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 2471370 - 2471416
Alignment:
Q  16 gtttcatccaataagagaatgagtgttgaagagggtgttgaaaagag 62  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||    
T  2471370 gtttcatccaataaaagaatgaatgttgaagagagtgttgaaaagag 2471416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 1088432 - 1088484
Alignment:
Q  13 ttggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||||||||| ||||||||||||||||||| || ||  |||||||||||||||    
T  1088432 ttggtttcattcaataagagaatgagtgttaaaaagaatgttgaaaagagagt 1088484  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 20546000 - 20545933
Alignment:
Q  10 acattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatt 77  Q
    ||||| |||||||  ||||||||| ||| ||||  |||| ||||||||||||||||||||||| ||||    
T  20546000 acatttgtttcatttaataagagagtgaatgttagagagagtgttgaaaagagagtatccctaacatt 20545933  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 7548791 - 7548749
Alignment:
Q  23 ccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7548791 ccaataagagaatgagtgttgaagagggtgttgaaaagagagt 7548749  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 25010064 - 25010006
Alignment:
Q  7 aatacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  25010064 aatacaatggtttcatccaataagagaatgagtgttgaaggaagtgttgaaaagagagt 25010006  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28274848 - 28274792
Alignment:
Q  16 gtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatcccta 72  Q
    |||||||||||||||||| ||||||||  |||| |||||||||||||||| ||||||    
T  28274848 gtttcatccaataagagagtgagtgttagagagagtgttgaaaagagagtgtcccta 28274792  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 31602121 - 31602075
Alignment:
Q  16 gtttcatccaataagagaatgagtgttgaagagggtgttgaaaagag 62  Q
    |||||||||||||||||||||||||||  |||| |||||||||||||    
T  31602121 gtttcatccaataagagaatgagtgttagagagagtgttgaaaagag 31602075  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 18953274 - 18953343
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatt 77  Q
    |||||||||||||||||||||| | |||||||||||||||  || ||||| ||| ||| |||||| ||||    
T  18953274 atacattggtttcatccaataaaaaaatgagtgttgaagaaagtcttgaagagatagtgtccctaacatt 18953343  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 18157108 - 18157035
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatttctc 81  Q
    |||||||  ||||||||||||| | | || |||||  |||| |||||||||||||||| |||||| ||||||||    
T  18157108 atacattaatttcatccaataaaaaagtgggtgttagagagagtgttgaaaagagagtgtccctagcatttctc 18157035  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 18473692 - 18473647
Alignment:
Q  35 tgagtgttgaagagggtgttgaaaagagagtatccctaccatttct 80  Q
    |||||||||||||| |||||||||||||||| || ||| |||||||    
T  18473692 tgagtgttgaagagagtgttgaaaagagagtgtctctagcatttct 18473647  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 33234051 - 33234002
Alignment:
Q  16 gtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||| |||||||||  ||||||||||| ||||| ||||||||||||||||    
T  33234051 gttttatccaataaacgaatgagtgtttaagagagtgttgaaaagagagt 33234002  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 44807130 - 44807167
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaa 45  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  44807130 atacattggtttcttccgataagagaatgagtgttgaa 44807167  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 214100 - 214048
Alignment:
Q  12 attggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  214100 attggttt-atccaataagagaatgagtgttgaagagagtgttgaaaagagagt 214048  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 46576018 - 46575961
Alignment:
Q  8 atacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    |||||||||||||| ||||||||||| ||||||||  |||| |||||||| |||||||    
T  46576018 atacattggtttcagccaataagagagtgagtgtttgagagagtgttgaagagagagt 46575961  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 7791896 - 7791824
Alignment:
Q  10 acattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatttctct 82  Q
    |||||||||| | ||||| ||| | |||| ||||||||  |||||||||||||||| |||||| |||||||||    
T  7791896 acattggtttaagccaattagaaagtgagcgttgaagaaagtgttgaaaagagagtgtccctaacatttctct 7791824  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 5452169 - 5452227
Alignment:
Q  7 aatacattggtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagt 65  Q
    ||||||||| ||||||||||||| ||| ||| |||| ||||| ||||||||||| ||||    
T  5452169 aatacattgatttcatccaataaaagagtgaatgttaaagagagtgttgaaaagtgagt 5452227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 10817446 - 10817482
Alignment:
Q  26 ataagagaatgagtgttgaagagggtgttgaaaagag 62  Q
    |||||||||||| |||||||| |||||||||||||||    
T  10817446 ataagagaatgaatgttgaagcgggtgttgaaaagag 10817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 296898 - 296837
Alignment:
Q  16 gtttcatccaataagagaatgagtgttgaagagggtgttgaaaagagagtatccctaccatt 77  Q
    |||||||||||||||||| ||||||||  |||| |||||||||||| ||| |||||| ||||    
T  296898 gtttcatccaataagagagtgagtgttagagagagtgttgaaaagaaagtgtccctagcatt 296837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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