View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4815-Insertion-2 (Length: 1002)
Name: NF4815-Insertion-2
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 8 - 584
Target Start/End: Original strand, 49693988 - 49694564
Alignment:
| Q |
8 |
tttttgactcttgacttagtgtgtttagctccatagtagcctcttcgtttacattgtctccaaagttaaacgtttccgcattctcatgtgaatggtaatc |
107 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49693988 |
tttttgactcttgacttactgtgtttagctccatagtagcctcttcgtttacattgtctccaaagttaaacgtttccgcattctcgtgtgaatggtaatc |
49694087 |
T |
|
| Q |
108 |
acaaaacaacccatcttttagaataaaatctaaaccagtttcagacaaaccatttttcaaatatttacactcttcaaagagtgcaggatcagaaagttca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694088 |
acaaaacaacccatcttttagaataaaatctaaaccagtttcagacaaaccatttttcaaatatttacactcttcaaagagtgcaggatcagaaagttca |
49694187 |
T |
|
| Q |
208 |
gaatactcaacaccctgaatttcattaccttcagaaacaccatcattggattcaaaaccaacagaagaatcatgcaacatatcttttgagtcatctacat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49694188 |
gaatactcaacaccctgaatttcattaccttcagaaacaccatcattggattcaaaaccaacagaagaatcatgcaacatatcttttgagtcgtctacat |
49694287 |
T |
|
| Q |
308 |
agtaagatacgcttaccagtttctcactctcgcattcttgatgagaagcagcatcactttgacctccattagttgcaatactttgaatcgttgtagtatt |
407 |
Q |
| |
|
| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694288 |
aatcagttacgcttaccagtttctcactctcgcattcttgatgagaagcaacatcactttgacctccattagttgcaatactttgaatcgttgtagtatt |
49694387 |
T |
|
| Q |
408 |
atcttcaacattttcttggcaatgttccaaaaaatattcaatattttcatcaaaggcatctgatagagattcacctgtttcaggattctgttctaaatag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694388 |
atcttcaacattttcttggcaatgttccaaaaaatattcaatattttcatcaaaggcatctgatagagattcacctgtttcaggattctgttctaaatag |
49694487 |
T |
|
| Q |
508 |
ccagcacttgtattatgctccagcattatgctgttgacataaccctcaacatcaaattccaataagctcttggcatt |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
49694488 |
ccagcacttgtattatgctccagcattatgctgttgacataaccctcaacatcaaattccaataagttgttggcatt |
49694564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 589 - 1002
Target Start/End: Original strand, 49694545 - 49694950
Alignment:
| Q |
589 |
tccaataagttgttggcattagaagtttcttccaccgtatcaatggtttcagtgttttccacttgcaagttactttccattacattatcagtctcaatta |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694545 |
tccaataagttgttggcattagaagtttcttccaccgtatcagtggtttc---------cacttgcaagttactttccattacattatcagtctcaatta |
49694635 |
T |
|
| Q |
689 |
actcaaccctaattccatcatctctatctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcatt |
788 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694636 |
actcatccctaattccatcatctctatctaaaccatataatttcatatcatcattttcaatttcattaaatgcaacacttaccttcccaaattgctcatt |
49694735 |
T |
|
| Q |
789 |
ctccaaaccatctctggaatactgcgacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctattcttattccaataccttctcca |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49694736 |
ctccaaaccatctctggaatactgcgacataacatcagaatcagttgcagtagcagtagagtctccatcacaagctactcttattccaataccttctcca |
49694835 |
T |
|
| Q |
889 |
tcaatggaaacatcggaacctgaatcagaattttctttttcaacgtccagcaccttaattctcggtgcgaggac-acattctccggtactctcacaacat |
987 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49694836 |
tcaatggaaacatcggaacctgaatcagaattttctttttcaacgtccagcaccttaattctcggtgcgaggacaacattctccggtactctcacaacat |
49694935 |
T |
|
| Q |
988 |
tcatgatttcaccac |
1002 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
49694936 |
tcatgatttcaccac |
49694950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University