View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4815-Insertion-3 (Length: 1000)
Name: NF4815-Insertion-3
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 33446845 - 33447351
Alignment:
| Q |
8 |
taaatcagctgggctttcacattgttggctatggttgcacaacttgtatcgggaattctggagaacttgataactcggtggcatctgcaatttcagaaaa |
107 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33446845 |
taaatcagttgggctttcacactgttggctatggttgcacaacctgtattggaaattccggagaactcgataactcggtggcatctgcaatttcagaaaa |
33446944 |
T |
|
| Q |
108 |
tggtatacattaagataatgcagatatttcattttcattttataacttaataaccacgaccctgctttaatcttcttgttccaacctttgcagacattat |
207 |
Q |
| |
|
||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33446945 |
tggtacacattaagataatacagatatttctttttcattttatatcttaataaccacgaccctgctttaaacttcttgttccaacctttgcagacattat |
33447044 |
T |
|
| Q |
208 |
tgctgcttctgttctttctggaaaccgaaattttgaaggtcgtgttcatccgttaacaagagcaaactaccttgcttctcctccattagttgttgcctat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447045 |
tgctgcttctgttctttctggaaaccgaaattttgaaggtcgtgttcatccgttaacaagagcaaactaccttgcttctcctccattagttgttgcctat |
33447144 |
T |
|
| Q |
308 |
gccctttccggcacggtttgtctatgttcttatgctttcatgatgtaacagttagcttttgaatgtaatttaaaaacatcttgaatgagtaagacttttt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447145 |
gccctttccggcacggtttgtctatgttcttatgctttcatgatataacagttaacttttgaatgtaatttaaaaacatcttgaatgagtaagacttttt |
33447244 |
T |
|
| Q |
408 |
tctctcttgtaagatagac-nnnnnnnnngtacaataagtagcagttggatttcgtcttgaagcagtcatgaattttctcaaaggagtttgagaataagg |
506 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447245 |
tctctcttgtaagatagacaaaaaaaaaagtacaataagtagcaattggatttcgtcttgaagcagtcatgaattttctcaaaggagtttgagaataagg |
33447344 |
T |
|
| Q |
507 |
tccagag |
513 |
Q |
| |
|
||||||| |
|
|
| T |
33447345 |
tccagag |
33447351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 534 - 1000
Target Start/End: Original strand, 33447336 - 33447802
Alignment:
| Q |
534 |
agaataaggtcaagagttgaaatcccgactacaaacataacatatcattactaccatttgtctatnnnnnnnncacttggtaactatacgagtttcagtt |
633 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33447336 |
agaataaggtccagagttgaaatcccgactacaaacataacatatcattactaccatttgtctataaaaaaaacacttggtaactatacgagtttcagtt |
33447435 |
T |
|
| Q |
634 |
ttcctgaatcatttcaatgatttttgaatcttcgacacttttaaattcatgcttaatttaaattttagctcaaggacaatttacatttcaggttgacatc |
733 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447436 |
ttcctgaatcatttcaatgatttttgaatcttctacacttttaaattcatgcttaatttaaattttagctcaaggacaatttacatttcaggttgacatc |
33447535 |
T |
|
| Q |
734 |
aacttctatgaagagtccctaggaagaggaaagaatggaagggatgtgtacctaaaagatatctggccaagtaatgaagaggtttcaaaggtagnnnnnn |
833 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33447536 |
aacttctatgaagagcccctaggaagaggaaagaatggaagggatgtgtacctaaaagatatctggccaagtaatgaagaggtttcaaaggtagaaaaaa |
33447635 |
T |
|
| Q |
834 |
ncagaaactaagctatgagatcaatgttatattgttaatttactctgaatatcatttaataattagactttgacatgtataatttcttgttacacgcata |
933 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33447636 |
acagaaattaagctatgagatcaatgtaatattgttaatttactctgaatatcatttaataattagactttgacatgtat-atttcttgttacacgcata |
33447734 |
T |
|
| Q |
934 |
taggctcttcaaacttatgtattgcctgacatgt--cagagcatttatggagactattacaaagggcaa |
1000 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
33447735 |
taggctcttcaaacttatgtattgcctgacatgttcaagagcatttat-gagactattacaaagggcaa |
33447802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 9097684 - 9097754
Alignment:
| Q |
251 |
gttcatccgttaacaagagcaaactaccttgcttctcctccattagttgttgcctatgccctttccggcac |
321 |
Q |
| |
|
|||||||| ||||| || || |||||||| ||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
9097684 |
gttcatccattaacgagggctaactacctagcttctcctcctctcgttgttgcctatgcccttgccggcac |
9097754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University