View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4815-Insertion-4 (Length: 950)
Name: NF4815-Insertion-4
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 493 - 950
Target Start/End: Original strand, 35380 - 35837
Alignment:
| Q |
493 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
592 |
Q |
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| T |
35380 |
gccatccatctcaacaatattttcttttttctttcagccagcacgttaactggctgccattttgctgttaccgctctcgttggtatactctccaatgcta |
35479 |
T |
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| Q |
593 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
692 |
Q |
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| T |
35480 |
ccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatggtcgccaatttgtctatcactgccatgaattttagcctaat |
35579 |
T |
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| Q |
693 |
gctaaactctgttggattctaccaagtattattctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
792 |
Q |
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| T |
35580 |
gctaaactctgttggattctaccaagtatttttctttcgttctttctttattcatcaactactttcattcagtttttatatgtattttgtaaggaccttc |
35679 |
T |
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| Q |
793 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
892 |
Q |
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| T |
35680 |
atacttggataacaacccatatgatatacacctaggatataaagttgttaattataaccttttatcacttgattgaaatcacttgtccctttttgtctcc |
35779 |
T |
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| Q |
893 |
tttcatgtctattcttttggaaaatgacaatttgtcacattgttttcaaactcgtatg |
950 |
Q |
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| T |
35780 |
tttcatgtctattcttttgaaaaatgacaatttgtgacattgttttcaaactcgtatg |
35837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 477
Target Start/End: Original strand, 34892 - 35356
Alignment:
| Q |
7 |
agaagtgtggtgagatgaagaggcataaatgttgttcatctcctttactcaggnnnnnnnncttctaattaataatcttgtctaaaaagaaaagaagaaa |
106 |
Q |
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| T |
34892 |
agaagtgtggtgagatgaagaggcataaatgttgttcatctcctttactcgggtttttttt-ttctaattaataatcttgtctaaaaagaaaagaagaaa |
34990 |
T |
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| Q |
107 |
tctttgttttgatcccaatcacataaacaattaaaggtagatttgattggattggatgcatttgcagagaaacaatgcatgcgtgctgtcgactatttct |
206 |
Q |
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| T |
34991 |
tctttgttttgatcccaatcacataaacaattaaaggtagatttgatt-----ggatgcatttgcagagaaacaatgcatgcgtgctgtcgactatttct |
35085 |
T |
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| Q |
207 |
tagatccatctagccaagggggaggaggaggagcggttatccttcaaattgattaatgttgatgttgttattattattatagatagagagatataatgga |
306 |
Q |
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| T |
35086 |
tagatccatctagccaagggggaggaggaggagcggttatccttcaaattgattaatgttgttgttgttattattattatagatagagagatataatgga |
35185 |
T |
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| Q |
307 |
gaatgtagtagtaaagaaaaaagcatctttatctaatgttggagcatgggggatgaacattgtcagctccgttggaattatcatcgccaacaaacaactc |
406 |
Q |
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| T |
35186 |
gaatgtagtagtaaagaaaaaagcatctttatctaatgttggagcatgggggatgaacattgtcagctccgttggaattatcatcgctaacaaacaactc |
35285 |
T |
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| Q |
407 |
atgtccaacaatggctatgttttcacttttggtcagccaccttctctcacacattcattcattgttgatgt |
477 |
Q |
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| T |
35286 |
atgtccaacaatggctatgttttcacttttggtcagccaccttctctcacacattcattcattgttgatgt |
35356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 8677533 - 8677443
Alignment:
| Q |
345 |
ttggagcatgggggatgaacattgtcagctccgttggaattatcatcgccaacaaacaactcatgtccaacaatggctatgttttcacttt |
435 |
Q |
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| T |
8677533 |
ttggagcatggggtatgaacgttgtgagttccgttggaattatcatggctaataaacagcttatgtccaacaatggctatgctttcacttt |
8677443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 721
Target Start/End: Complemental strand, 8677325 - 8677160
Alignment:
| Q |
553 |
tttgctgttaccgctctcgttggtatactctccaatgctaccggttactcgtcttcatcaaagcatgtccctatgtgggagcttctttggttctctatgg |
652 |
Q |
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| T |
8677325 |
tttgctgttactgctcttgtcggtctcgtctcaaatgctaccggttattctgcttct---aagcatgttcctttgtgggagcttatttggttctctgctg |
8677229 |
T |
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| Q |
653 |
tcgccaatttgtctatcactgccatgaattttagcctaatgctaaactctgttggattctaccaagtat |
721 |
Q |
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| T |
8677228 |
ttgccaatatatctatcaccgggatgaacttgagcctcatgctcaattccgttggattctaccaagtat |
8677160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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