View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4815-Insertion-6 (Length: 865)
Name: NF4815-Insertion-6
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4815-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 349 - 588
Target Start/End: Original strand, 8431123 - 8431362
Alignment:
| Q |
349 |
tcaaaagtaatgacttgcgataaattgattctaatccattcttattgcttagactctctctacttagttcctgatttatggaatattgacttcccttcct |
448 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
8431123 |
tcaaaagttatgacttgcgataaattgattctaatccattcttattgcttagactctctctacctagttcctgatttatggaatattgatttcccttcct |
8431222 |
T |
|
| Q |
449 |
tgcgtaacttgatgtcacggagaattaaaacacacaaaccttcatcaatgccagagggagcattggacttttttcttcaaaatgcatcgtgagcagagat |
548 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8431223 |
tgcgtaacttgacgtcacggagaattaaaacacacaaaccttcatcaatgccagagggagcattggacttttttctacaaaatgcatcgtgagcagagat |
8431322 |
T |
|
| Q |
549 |
tgacatcatacatcgattaaggtaaatatgcatgcaactt |
588 |
Q |
| |
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| T |
8431323 |
tgacatcatacatcgattaaggtaaatatgcatgcaactt |
8431362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 677 - 865
Target Start/End: Original strand, 8431974 - 8432162
Alignment:
| Q |
677 |
aatttccatgttagaaagtagctgtgtttacaagttaatgcaacatagatcaagtcatgtaatatttagctaggcaagcttaatttaatttacattcgag |
776 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8431974 |
aatttccatgttagaaagtagctgtgtttacaagttaatgcaacatatatcaattcatgtaatatttagctaggcaagcttaatttaatttacattcgag |
8432073 |
T |
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| Q |
777 |
tatttttccttatttaagtaattgaagaagnnnnnnnctgccaatgatatagtattgattttcctacatcatagatcatatttgctgca |
865 |
Q |
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| T |
8432074 |
tatttttccttatttaagtaattgaagaagaaaaaaactaccaatgatatagtattgattttcctacatcatagatcatatttgctgca |
8432162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 66 - 280
Target Start/End: Original strand, 8430829 - 8431054
Alignment:
| Q |
66 |
ttattcactgcgtgtacggggtggggcagggatatccgaacccatcgaggacagtaatacccgaatacgttgggtatggatagggtaaagtatatgagaa |
165 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
8430829 |
ttattcactgcgtgtacggggcggggcagggatatccgaacccgtcgaagacagtaatacccgaacacgttggatatgggtagggtaaagtatatgagaa |
8430928 |
T |
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| Q |
166 |
tcagagac--------ggaacgtaaaactcgtctccatcccgccccattgccatacctcagatactcttagttttactcaacgggcaagttgaacttgc- |
256 |
Q |
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| T |
8430929 |
tcagagacagaggcggggaacgtaaaactcgtctccatcccgccccattgccatacctcagatactcttagttttactcaacgggcaggttgaacttgct |
8431028 |
T |
|
| Q |
257 |
--tatagaatcattgacactcgattc |
280 |
Q |
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| T |
8431029 |
aatatagaatcattgacactcgattc |
8431054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 736 - 805
Target Start/End: Original strand, 8437594 - 8437663
Alignment:
| Q |
736 |
taatatttagctaggcaagcttaatttaatttacattcgagtatttttccttatttaagtaattgaagaa |
805 |
Q |
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| T |
8437594 |
taatatttggctaggcaagcttagtttaattaacattcaagtatttttccttgtttaagtaattgaagaa |
8437663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 736 - 805
Target Start/End: Original strand, 8440819 - 8440888
Alignment:
| Q |
736 |
taatatttagctaggcaagcttaatttaatttacattcgagtatttttccttatttaagtaattgaagaa |
805 |
Q |
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| T |
8440819 |
taatatttggctaggcaagcttagtttaattaacattcaagtatttttccttgtttaagtaattgaagaa |
8440888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 34776123 - 34776082
Alignment:
| Q |
174 |
ggaacgtaaaactcgtctccatcccgccccattgccatacct |
215 |
Q |
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|||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
34776123 |
ggaaggtaaaacccgtccccatcccgccccattgccatacct |
34776082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 44986324 - 44986365
Alignment:
| Q |
174 |
ggaacgtaaaactcgtctccatcccgccccattgccatacct |
215 |
Q |
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| T |
44986324 |
ggaaggtaaaactcgtccccatcccgccccattgtcatacct |
44986365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 32052717 - 32052680
Alignment:
| Q |
174 |
ggaacgtaaaactcgtctccatcccgccccattgccat |
211 |
Q |
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|||| |||||||||||||||||||||| |||||||||| |
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| T |
32052717 |
ggaaggtaaaactcgtctccatcccgctccattgccat |
32052680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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