View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4815-Insertion-8 (Length: 858)

Name: NF4815-Insertion-8
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4815-Insertion-8
NF4815-Insertion-8
[»] chr1 (4 HSPs)
chr1 (9-848)||(2605340-2606182)
chr1 (15-201)||(2607502-2607682)
chr1 (530-589)||(2859410-2859469)
chr1 (531-589)||(3169774-3169832)
[»] chr4 (2 HSPs)
chr4 (522-595)||(42684805-42684878)
chr4 (541-593)||(41853392-41853444)
[»] scaffold0003 (1 HSPs)
scaffold0003 (523-589)||(347589-347655)
[»] chr3 (2 HSPs)
chr3 (523-589)||(45828246-45828312)
chr3 (530-589)||(472078-472137)
[»] chr8 (4 HSPs)
chr8 (521-589)||(38475745-38475813)
chr8 (531-593)||(17469826-17469888)
chr8 (531-593)||(17477073-17477135)
chr8 (531-589)||(19256838-19256896)
[»] chr2 (2 HSPs)
chr2 (541-593)||(10570988-10571040)
chr2 (531-593)||(2324482-2324544)
[»] chr5 (3 HSPs)
chr5 (530-589)||(9368602-9368661)
chr5 (530-593)||(17352449-17352512)
chr5 (523-589)||(7369724-7369790)
[»] scaffold0334 (1 HSPs)
scaffold0334 (531-593)||(4443-4505)
[»] chr7 (3 HSPs)
chr7 (531-593)||(26562087-26562149)
chr7 (531-593)||(36206077-36206139)
chr7 (664-693)||(42078137-42078166)


Alignment Details
Target: chr1 (Bit Score: 592; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 9 - 848
Target Start/End: Complemental strand, 2606182 - 2605340
Alignment:
Q  9 ttatcaatcacgtgtaagctgtattgcaaatttatgtggaccacacattcatgcagatcattcacacaattgttgcattgtctcaccatcttaactaatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2606182 ttatcaatcacgtgtaagctgtattgcaaatttatgtggaccacacattcatgcagatcattcacacaattgttgcattgtctcaccatcttaactaatt 2606083  T
Q  109 gattttaaattaatacagtattgtttttgagggaaactaattgattttaattgaagggttaatgtttaaactttacggaatcaaatacatgaaattattg 208  Q
    ||||||||||| | |    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2606082 gattttaaatttaaa----attgtttttgagggaaactaattgattttaattgaagggttaatgtttaaacttcacggaatcaaatacatgaaattattg 2605987  T
Q  209 atctaaacaacataactaattgcgaaatgtaaaaactagctcgtttgctggtcgatataagataaaaatacgata--gattataaaaatggagtctaaac 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  2605986 atctaaacaacataactaattgcgaaatgtaaaaactagctcgtttgctggtcgatata-gataaaaatacgatatagattataaaaatggagtctaaac 2605888  T
Q  307 aaaagaaga---taaaggtataatatgacatggacatgataaacattaattagagtctcaattgaaagtgtttgtaagtggaaataattctctcacattt 403  Q
    |||||||||   ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| |||||||||||||||    
T  2605887 aaaagaagaagataaaggtataatacgacatggacatgataaacattaattagagtctccattgaaagtgtccgtaagtggaaacaattctctcacattt 2605788  T
Q  404 taagatgttgctgttagaattctattatcagagtacccactg----tttatatccacacaccaaggctaatagtgctcggcgtaagagtgtgttatgaag 499  Q
    ||||||||||||||||||||||| ||||| |||||||||||     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2605787 taagatgttgctgttagaattctgttatcggagtacccactagctatttatatccacacaccaaggctaatagtgctcggcataagagtgtgttatgaag 2605688  T
Q  500 tcccacattaaa-gtgaaataacttgaacaagtgtttatatatg--gaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaagcc 596  Q
    | |||||||||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  2605687 ttccacattaaaagtgaaataacttgaacaagtttttatatatgtggaggcaatctttacctcacaagtaggttttgtgaggttgtgttgggctcaagcc 2605588  T
Q  597 caactccaaattctaagaacaaaactatcttatcatatgcatggttgacgtgcacaaggta--aattacgataacattattttatcatatcatatttttt 694  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||  || ||||||||||||||||||||||||||||||||||    
T  2605587 caaccccaaattctaagaacaaaactatcttatcatatgcatggttgatgtgaacaaggtaacaaatacgataacattattttatcatatcatatttttt 2605488  T
Q  695 atacataaaaacataatgatatgattaaggagaagtgtgatccgtttataatattagaacaaatgagacatgcctctttataagattaagaggaaatatt 794  Q
    |||||| |||||||||||||||||||||||||||||||   |  || ||||||||   | |||  |||||||||||| ||||||||||| ||||||||||    
T  2605487 atacat-aaaacataatgatatgattaaggagaagtgtctac--ttcataatatt---ataaagtagacatgcctctgtataagattaaaaggaaatatt 2605394  T
Q  795 gttcccatgaacttacctcaattagttgagacaatgcattgtaatatatatggg 848  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  2605393 gttcctatgaacttacctcaattggttgagacaatgcattgtaatatacatggg 2605340  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 2607682 - 2607502
Alignment:
Q  15 atcacgtgtaagctgtattgcaaatttatgtggaccacacattcatgcagatcattcacacaattgttgcattgtctcaccatcttaactaattgatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||| || ||||| ||||||||||||||    
T  2607682 atcacgtgtaagctgtattgcaaatttatgtggaccacacattcatgcaggtcattcacacaa---ttgcattgtcacaacatctaaactaattgatttt 2607586  T
Q  115 aa-attaatacagtattgtttttgagggaaactaattgattttaattgaagggttaatgtttaaactttacggaatcaaatacatgaa 201  Q
    ||  ||||||  ||    ||||| |||| |||| |||||||||||||||| ||||| | ||||||||||| | |||||||||||||||    
T  2607585 aattttaatattgt----ttttttaggggaactgattgattttaattgaatggttagtttttaaactttatgaaatcaaatacatgaa 2607502  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 589
Target Start/End: Complemental strand, 2859469 - 2859410
Alignment:
Q  530 gtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    |||||||||  ||| ||||||| ||||||||| ||| |||| ||||||||||||||||||    
T  2859469 gtgtttataagtgggggcaatccttacctcacaagccggttctgtgaggttgtgttaggc 2859410  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 589
Target Start/End: Original strand, 3169774 - 3169832
Alignment:
Q  531 tgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    ||||||||  ||| ||||||||| ||||||| ||| ||||||||| |||||||||||||    
T  3169774 tgtttataagtgggggcaatcttcacctcacaagccggttttgtggggttgtgttaggc 3169832  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 522 - 595
Target Start/End: Complemental strand, 42684878 - 42684805
Alignment:
Q  522 ttgaacaagtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaagc 595  Q
    ||||||||||||||||| |||| ||||||| | ||||||| ||| |||||||||  |||| |||||||||||||    
T  42684878 ttgaacaagtgtttataaatgggggcaatcatcacctcacaagccggttttgtggcgttgagttaggctcaagc 42684805  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 593
Target Start/End: Original strand, 41853392 - 41853444
Alignment:
Q  541 tggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    ||||||||||||| ||||||| |||  ||||||||||||||||||||||||||    
T  41853392 tggaggcaatcttcacctcacaagctagttttgtgaggttgtgttaggctcaa 41853444  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 589
Target Start/End: Complemental strand, 347655 - 347589
Alignment:
Q  523 tgaacaagtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    ||||||||||||||||  ||| |||| |||||||||||| ||| ||||||||| |||||| ||||||    
T  347655 tgaacaagtgtttataattgggggcagtctttacctcacaagccggttttgtggggttgtattaggc 347589  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 589
Target Start/End: Original strand, 45828246 - 45828312
Alignment:
Q  523 tgaacaagtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    |||||| |||||||||  ||| ||||||||  ||||||| ||||||||||||| |||||||||||||    
T  45828246 tgaacatgtgtttataagtgggggcaatctccacctcacaagcaggttttgtggggttgtgttaggc 45828312  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 589
Target Start/End: Complemental strand, 472137 - 472078
Alignment:
Q  530 gtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    |||||||||  ||| ||||||| ||||||||| ||| ||||||||| |||||||||||||    
T  472137 gtgtttataagtgggggcaatccttacctcacaagccggttttgtggggttgtgttaggc 472078  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 589
Target Start/End: Original strand, 38475745 - 38475813
Alignment:
Q  521 cttgaacaagtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    ||||||||||||||||||  ||| ||||||| | ||||||| ||| ||||||||  |||||||||||||    
T  38475745 cttgaacaagtgtttataagtgggggcaatcctcacctcacaagccggttttgtagggttgtgttaggc 38475813  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 593
Target Start/End: Original strand, 17469826 - 17469888
Alignment:
Q  531 tgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    ||||||||  ||| ||||||| | ||||||| ||| ||||||||| |||||||||||||||||    
T  17469826 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggctcaa 17469888  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 593
Target Start/End: Original strand, 17477073 - 17477135
Alignment:
Q  531 tgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    ||||||||  ||| ||||||| | ||||||| ||| ||||||||| |||||||||||||||||    
T  17477073 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggctcaa 17477135  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 589
Target Start/End: Complemental strand, 19256896 - 19256838
Alignment:
Q  531 tgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    ||||||||  ||| ||||||| | ||||||| ||||||||||||| |||||||||||||    
T  19256896 tgtttataagtgggggcaatcctcacctcacaagcaggttttgtggggttgtgttaggc 19256838  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 541 - 593
Target Start/End: Original strand, 10570988 - 10571040
Alignment:
Q  541 tggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    ||||||||||||| |||| || ||| ||||||||| |||||||||||||||||    
T  10570988 tggaggcaatcttcaccttacaagccggttttgtggggttgtgttaggctcaa 10571040  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 593
Target Start/End: Original strand, 2324482 - 2324544
Alignment:
Q  531 tgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    ||||||||  ||| ||||||| | ||||||| ||| ||||||||| |||||||||||||||||    
T  2324482 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggctcaa 2324544  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 589
Target Start/End: Original strand, 9368602 - 9368661
Alignment:
Q  530 gtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    |||||||||  ||||||||||| | ||||||| ||| ||||||||| |||||||||||||    
T  9368602 gtgtttataagtggaggcaatcctcacctcacaagccggttttgtggggttgtgttaggc 9368661  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 593
Target Start/End: Complemental strand, 17352512 - 17352449
Alignment:
Q  530 gtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    |||||||||  ||| ||||||| | ||||||| ||| ||||||||||||||| |||||||||||    
T  17352512 gtgtttataagtgggggcaatcatcacctcacaagccggttttgtgaggttgcgttaggctcaa 17352449  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 523 - 589
Target Start/End: Original strand, 7369724 - 7369790
Alignment:
Q  523 tgaacaagtgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggc 589  Q
    ||||||||||||||||  ||| |||| || | ||||||| ||| ||||||||| |||||||||||||    
T  7369724 tgaacaagtgtttataagtgggggcagtcctcacctcacaagccggttttgtggggttgtgttaggc 7369790  T

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Target: scaffold0334 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 593
Target Start/End: Complemental strand, 4505 - 4443
Alignment:
Q  531 tgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    ||||||||  ||| ||||||| | ||||||| ||| ||||||||| |||||||||||||||||    
T  4505 tgtttataagtgggggcaatcctcacctcacaagccggttttgtggggttgtgttaggctcaa 4443  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 593
Target Start/End: Complemental strand, 26562149 - 26562087
Alignment:
Q  531 tgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    ||||||||  ||| ||||||||| ||||||| ||| ||||||||| |||| ||||||||||||    
T  26562149 tgtttataagtgggggcaatcttcacctcacaagccggttttgtggggttatgttaggctcaa 26562087  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 531 - 593
Target Start/End: Complemental strand, 36206139 - 36206077
Alignment:
Q  531 tgtttatatatggaggcaatctttacctcaccagcaggttttgtgaggttgtgttaggctcaa 593  Q
    ||||||||  ||||||||||||| ||||||| ||| |||||| || |||||| ||||||||||    
T  36206139 tgtttataagtggaggcaatcttcacctcacaagccggttttatggggttgtattaggctcaa 36206077  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 693
Target Start/End: Complemental strand, 42078166 - 42078137
Alignment:
Q  664 gataacattattttatcatatcatattttt 693  Q
    ||||||||||||||||||||||||||||||    
T  42078166 gataacattattttatcatatcatattttt 42078137  T

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