View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4815-Insertion-9 (Length: 781)

Name: NF4815-Insertion-9
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4815-Insertion-9
NF4815-Insertion-9
[»] chr3 (1 HSPs)
chr3 (8-766)||(48636788-48637546)


Alignment Details
Target: chr3 (Bit Score: 739; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 8 - 766
Target Start/End: Complemental strand, 48637546 - 48636788
Alignment:
Q  8 ttcctatcagtactcttgttcagaatgctactctaggcctaattgcaaaatgattacacaactcaactaggttggccatggtagattgatctttaacagc 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48637546 ttcctatcagtactcttgttcagaatgctactctgggcctaattgcaaaatgattacacaactcaactaggttggccatggtagattgatctttaacagc 48637447  T
Q  108 aagtggaacagtggaagaacctaaaaagctaattttcaaattttgctttaaaactgctgattaattttgattgcagtatcaaagaacagtcaaataaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48637446 aagtggaacagtggaagaacctaaaaagctaattttcaaattttgctttaaaactgctgattaattttgattgcagtatcaaagaacagtcaaataaatt 48637347  T
Q  208 caaggaataagtctctgtggcaaagataagatcctaggactgatggtgtgaaatgagaaaatgaacagaacataaactcacctcttctgtcagccattgc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48637346 caaggaataagtctctgtggcaaagataagatcctaggactgatggtgtgaaatgagaaaatgaacagaacataaactcacctcttctgtcagccattgc 48637247  T
Q  308 aaggtatcccaatcaacttcttccctaacaaaaacttcttcgtacttagctaacccgagaccacgtatccattcgacgacaggggagtttttcggcccaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48637246 aaggtatcccaatcaacttcttccctaacaaaaacttcttcgtacttagctaacccaagaccacgtatccattcgacgacaggggagtttttcggcccaa 48637147  T
Q  408 attgagctcccacgtcatcatttggaggcgcaacctgcatacgatattaagaattttacatcattaggttataacaaattactaagctatgccatttaaa 507  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48637146 attgagctcccacatcatcatttggaggcgcaacctgcatacgatattaagaattttacgtcattaggttataacaaattactaagctatgccatttaaa 48637047  T
Q  508 tcttcaaccatcacgaatgttgacaccacggctaaatcaacaacctcatcaatctattttgacttataaactatagaagaataaaaacctagtaactaca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48637046 tcttcaaccatcacgaatgttgacaccacggctaaatcaacaacctcatcaatctattttgacttataaactatagaagaataaaaacctagtaactaca 48636947  T
Q  608 gaccttttctttcttaattaagaacctatcaagtttgtctcatctcatacagtaaaaggctacagggacatctcatatgttagggtgcaggtttgtatcc 707  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48636946 gaccttttctttcttaattaaaaacctatcaagtttgtctcatctcatacagtaaaaggctacagggacatctcatatgttagggtgcaggtttgtatcc 48636847  T
Q  708 gcaattccccacttctcatcactgtgtgtgtgagtttcatcgctagactcattacagcc 766  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48636846 gcaattccccacttctcatcactgtgtgtgtgagtttcatcgctagactcattacagcc 48636788  T

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