View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4815_low_1 (Length: 599)

Name: NF4815_low_1
Description: NF4815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4815_low_1
NF4815_low_1
[»] chr8 (4 HSPs)
chr8 (1-583)||(7099557-7100139)
chr8 (309-428)||(33079672-33079792)
chr8 (150-191)||(163440-163481)
chr8 (140-180)||(41383496-41383536)
[»] chr3 (7 HSPs)
chr3 (140-180)||(27421405-27421445)
chr3 (390-543)||(41163107-41163263)
chr3 (140-180)||(53917125-53917165)
chr3 (146-184)||(24933178-24933216)
chr3 (127-180)||(15830649-15830702)
chr3 (140-180)||(456674-456714)
chr3 (140-180)||(3315449-3315489)
[»] chr6 (3 HSPs)
chr6 (140-181)||(15534052-15534093)
chr6 (140-180)||(3395184-3395224)
chr6 (146-180)||(17012857-17012891)
[»] chr2 (2 HSPs)
chr2 (140-180)||(6263605-6263645)
chr2 (140-180)||(28569876-28569916)
[»] chr1 (5 HSPs)
chr1 (140-180)||(6996372-6996412)
chr1 (147-180)||(16429743-16429776)
chr1 (143-183)||(17346160-17346200)
chr1 (140-180)||(25250732-25250772)
chr1 (140-180)||(31736927-31736967)
[»] scaffold0133 (1 HSPs)
scaffold0133 (146-180)||(26341-26375)
[»] chr7 (5 HSPs)
chr7 (143-184)||(3786606-3786647)
chr7 (140-180)||(7351102-7351142)
chr7 (140-180)||(20298112-20298152)
chr7 (140-180)||(28486362-28486402)
chr7 (140-180)||(38394783-38394823)
[»] scaffold1674 (1 HSPs)
scaffold1674 (140-180)||(903-943)
[»] scaffold0005 (1 HSPs)
scaffold0005 (140-180)||(50806-50846)
[»] scaffold0004 (1 HSPs)
scaffold0004 (140-180)||(80654-80694)
[»] chr5 (5 HSPs)
chr5 (140-180)||(658806-658846)
chr5 (140-180)||(18510865-18510905)
chr5 (140-180)||(20043772-20043812)
chr5 (140-180)||(25806249-25806289)
chr5 (140-180)||(27911220-27911260)
[»] chr4 (2 HSPs)
chr4 (140-180)||(14788884-14788924)
chr4 (140-180)||(22802188-22802228)


Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 7100139 - 7099557
Alignment:
Q  1 agataaggtacaaaatgtcattatcatgtgccttagagataaggtgttgagggaagtcgcgaaggagaagactccagcgacaatgtggaccaagttagaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100139 agataaggtacaaaatgtcattatcctgtgccttagagataaggtgttgagggaagtcgcgaaggagaagactccagcgacaatgtggaccaagttagaa 7100040  T
Q  101 ctggtgtacttggccaagtcattggatcataggctatgtctaaaacaacaactttactcatttaagatggtagagtcaaaatctttagtggaacaaccta 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100039 ctagtgtacttggccaagtcattggatcataggctatgtctaaaacaacaactttactcatttaagatggtagagtcaaaatctttagtggaacaaccta 7099940  T
Q  201 cacaattgaacaaatttattgatgatctaaaaatattgaagtaaattttgatgatgaggatatattattactcttattgagtttgttgcctaagaaatat 300  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7099939 cgcaattgaacaaatttattgatgatataaaaatattgaagtaaattttgatgatgaggatatattattactcttattgagtttgttgcctaagaaatat 7099840  T
Q  301 tgaagtaaaacacatcgatggttgtttacccaactcaacctaatatgacctatgtatggggggagagagtaactccacaatcttctataaaatgagtgat 400  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  7099839 tgaagtaaaacacatcgatgattgtttacccaactcaacctaatatgacctatgtatggggggagagagtaactccgcagtcctctataaaatgagtgat 7099740  T
Q  401 acatgaggttacaagaaattagatccaaaaggtcacaaacaacaatcaataattttacccattcatcaagccattgaaccgtcctagagatcccaagaga 500  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  7099739 acatgaggttacacgaaattagatccaaaaggtcacaaacaacaatcaataattttacccattcatcaagccattgaaccgtcgtagagatcctaagaga 7099640  T
Q  501 aaacaagagagaaatctttgatcctaccactaataagatctcactaaccaaggtatttcaaatgtgtttcataatccaaaaat 583  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7099639 aaacaagagagaaatctttgatcccgccactaataagatctcactaaccaaggtatttgaaatgtgtttcataatccaaaaat 7099557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 33079672 - 33079792
Alignment:
Q  309 aacacatcgatggttgtttacccaactcaacctaatatgacctatgtatggggggagagagtaactccacaatcttctataaaatgagtgatacatg-ag 407  Q
    |||||||| ||| ||||| |||||  || ||| |||||||||||  | ||||||||||||  | |||  |||||  |||| |||| ||||||||| | ||    
T  33079672 aacacatcaatgcttgttaacccagttcgacccaatatgacctacatctggggggagagatcagctctccaatccactatgaaattagtgatacaaggag 33079771  T
Q  408 gttacaagaaattagatccaa 428  Q
    |||||||||||||||||||||    
T  33079772 gttacaagaaattagatccaa 33079792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 163481 - 163440
Alignment:
Q  150 aactttactcatttaagatggtagagtcaaaatctttagtgg 191  Q
    ||||||| |||||| |||||||||||||||||||| ||||||    
T  163481 aactttattcatttcagatggtagagtcaaaatctatagtgg 163440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 41383496 - 41383536
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| |||||||||||||||||| |||||||| |||||||    
T  41383496 ctaaagcaacaactttactcatttgagatggtaaagtcaaa 41383536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 27421405 - 27421445
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  27421405 ctaaaacaacaactttactcattcaagatggtagagtcaaa 27421445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 543
Target Start/End: Complemental strand, 41163263 - 41163107
Alignment:
Q  390 aaatgagtgatacat-gaggttacaagaaattagatccaaaaggtcacaaacaacaatcaataatttt-acccattcatcaagccattgaa-ccgtccta 486  Q
    ||||||||||||||  |||||| ||| |||||||||||||||| ||| ||| ||||| |  ||||||  ||||| | |||||| || | || ||  | ||    
T  41163263 aaatgagtgatacaaagaggttccaaaaaattagatccaaaagctcataaagaacaaaccctaatttcgacccagttatcaagtcactcaaacccacata 41163164  T
Q  487 gagatcccaagagaaaacaagagagaaatctttgatcctaccactaataagatctca 543  Q
    |||||||  ||||||||||||||||||| ||||| |||| || ||||| ||||||||    
T  41163163 gagatcctgagagaaaacaagagagaaagctttggtccttcctctaatgagatctca 41163107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 53917165 - 53917125
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  53917165 ctaaagcaacaactttactcatttaagatggtaaagtcaaa 53917125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 24933178 - 24933216
Alignment:
Q  146 caacaactttactcatttaagatggtagagtcaaaatct 184  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  24933178 caacaactttactcattcaagatggtaaagtcaaaatct 24933216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 15830702 - 15830649
Alignment:
Q  127 tcataggctatgtctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    |||||||| ||  ||||| ||| |||||||||||||||||||||| ||||||||    
T  15830702 tcataggcaattcctaaagcaagaactttactcatttaagatggtggagtcaaa 15830649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 456674 - 456714
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| |||||||| |||||||| |||||||||||||||||    
T  456674 ctaaagcaacaactctactcattcaagatggtagagtcaaa 456714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 3315449 - 3315489
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  3315449 ctaaagcaacaactttattcattcaagatggtagagtcaaa 3315489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 15534093 - 15534052
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaaa 181  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  15534093 ctaaagcaacaactttactcattcaagatggtagagtcaaaa 15534052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 3395184 - 3395224
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  3395184 ctaaagcaacaactttactcattcaagatggtagagtcaaa 3395224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 17012857 - 17012891
Alignment:
Q  146 caacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||||||||||||||| |||||||||||||||||    
T  17012857 caacaactttactcattcaagatggtagagtcaaa 17012891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 6263645 - 6263605
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  6263645 ctaaagcaacaactttactcattcaagatggtagagtcaaa 6263605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 28569916 - 28569876
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  28569916 ctaaaacaaaaactttactcattcaagatggtagagtcaaa 28569876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 6996372 - 6996412
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  6996372 ctaaagcaacaactttactcatttaagatggtaaagtcaaa 6996412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 16429743 - 16429776
Alignment:
Q  147 aacaactttactcatttaagatggtagagtcaaa 180  Q
    |||||||||||||||| |||||||||||||||||    
T  16429743 aacaactttactcattcaagatggtagagtcaaa 16429776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 17346160 - 17346200
Alignment:
Q  143 aaacaacaactttactcatttaagatggtagagtcaaaatc 183  Q
    ||||||||||| |||||||| |||||||||||||| |||||    
T  17346160 aaacaacaactctactcattcaagatggtagagtctaaatc 17346200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 25250772 - 25250732
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| |||||||| |||||||| |||||||||||||||||    
T  25250772 ctaaagcaacaactctactcattcaagatggtagagtcaaa 25250732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 31736967 - 31736927
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  31736967 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 31736927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 26375 - 26341
Alignment:
Q  146 caacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||||||||||||||| |||||||||||||||||    
T  26375 caacaactttactcattcaagatggtagagtcaaa 26341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 3786606 - 3786647
Alignment:
Q  143 aaacaacaactttactcatttaagatggtagagtcaaaatct 184  Q
    |||||||||||||||||||||||||||| |  ||||||||||    
T  3786606 aaacaacaactttactcatttaagatggcatcgtcaaaatct 3786647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 7351142 - 7351102
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| |||||||| |||||||| |||||||||||||||||    
T  7351142 ctaaagcaacaactctactcattcaagatggtagagtcaaa 7351102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 20298112 - 20298152
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  20298112 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 20298152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 28486362 - 28486402
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  28486362 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 28486402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 38394783 - 38394823
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| |||||||| |||||||| |||||||||||||||||    
T  38394783 ctaaagcaacaactctactcattcaagatggtagagtcaaa 38394823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 943 - 903
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  943 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 50806 - 50846
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  50806 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 50846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 80654 - 80694
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  80654 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 80694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 658806 - 658846
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  658806 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 658846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 18510905 - 18510865
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  18510905 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 18510865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 20043772 - 20043812
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||| |||||||||    
T  20043772 ctaaagcaacaactttactcattcaagatggcagagtcaaa 20043812  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 25806249 - 25806289
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  25806249 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 25806289  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 27911220 - 27911260
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  27911220 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 27911260  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 14788924 - 14788884
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  14788924 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 14788884  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 22802228 - 22802188
Alignment:
Q  140 ctaaaacaacaactttactcatttaagatggtagagtcaaa 180  Q
    ||||| ||||||||||||||||| ||||||||| |||||||    
T  22802228 ctaaagcaacaactttactcattcaagatggtaaagtcaaa 22802188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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