View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4816-Insertion-2 (Length: 610)

Name: NF4816-Insertion-2
Description: NF4816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4816-Insertion-2
NF4816-Insertion-2
[»] chr3 (4 HSPs)
chr3 (8-609)||(37460465-37461066)
chr3 (470-541)||(48098129-48098200)
chr3 (470-522)||(21196422-21196474)
chr3 (470-542)||(29774820-29774892)
[»] chr2 (14 HSPs)
chr2 (16-106)||(7117975-7118065)
chr2 (27-124)||(3144353-3144450)
chr2 (235-404)||(7118172-7118344)
chr2 (237-298)||(9317798-9317859)
chr2 (332-463)||(9317651-9317782)
chr2 (129-201)||(3144300-3144372)
chr2 (129-209)||(9325975-9326056)
chr2 (36-129)||(9326032-9326124)
chr2 (486-542)||(44329723-44329779)
chr2 (470-541)||(3259877-3259948)
chr2 (470-541)||(31297645-31297716)
chr2 (499-541)||(31416-31458)
chr2 (492-542)||(15630433-15630483)
chr2 (492-541)||(31298821-31298870)
[»] scaffold0667 (4 HSPs)
scaffold0667 (36-108)||(1169-1241)
scaffold0667 (230-302)||(1010-1082)
scaffold0667 (404-463)||(887-945)
scaffold0667 (158-194)||(1110-1146)
[»] chr5 (8 HSPs)
chr5 (470-541)||(2897956-2898027)
chr5 (470-541)||(16931254-16931325)
chr5 (470-541)||(17646609-17646680)
chr5 (470-539)||(6807934-6808003)
chr5 (492-541)||(17644759-17644808)
chr5 (492-541)||(39939988-39940036)
chr5 (474-542)||(17851866-17851934)
chr5 (497-541)||(27809768-27809812)
[»] chr8 (2 HSPs)
chr8 (497-542)||(44374023-44374068)
chr8 (499-541)||(8816592-8816634)
[»] scaffold0915 (1 HSPs)
scaffold0915 (471-539)||(793-861)
[»] chr7 (2 HSPs)
chr7 (471-539)||(28985287-28985355)
chr7 (470-541)||(31602911-31602982)
[»] chr6 (2 HSPs)
chr6 (486-542)||(22019615-22019671)
chr6 (499-541)||(33203458-33203500)
[»] chr1 (3 HSPs)
chr1 (470-542)||(37504995-37505066)
chr1 (470-546)||(48898887-48898963)
chr1 (499-541)||(16002640-16002682)
[»] chr4 (5 HSPs)
chr4 (470-541)||(9617214-9617285)
chr4 (487-541)||(35142862-35142916)
chr4 (492-541)||(38193391-38193440)
chr4 (492-541)||(38194542-38194591)
chr4 (499-539)||(55686248-55686288)
[»] scaffold0004 (1 HSPs)
scaffold0004 (500-541)||(127239-127280)


Alignment Details
Target: chr3 (Bit Score: 570; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 8 - 609
Target Start/End: Complemental strand, 37461066 - 37460465
Alignment:
Q  8 cttctaggttttatttctattgaagctgttgaatcacctgagctaaaagatataatgattgtttggtggtgattatggaatttcaatttagggattattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37461066 cttctaggttttatttctattgaagctgttgaatcacctgagctaaaagatataatgattgtttggtggtgattatggaatttcaatttagggattattc 37460967  T
Q  108 tagccgtaacttgctggtagtttctaatcgtaacttgctggcagctccttttgttattaaactaaaccataatgtcaatgccatggtgcaaaagctcctt 207  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37460966 tagccgtaacttactggtagtttctaatcgtaacttgctggtagctccttttgttattaaactaaaccataatgtcaatgccatggtgcaaaagctcctt 37460867  T
Q  208 ttgttattccaaactaaaccatattacaacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgtattgtaattctaaag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37460866 ttgttattccaaactaaaccatattacaacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgttttgtaattctaaag 37460767  T
Q  308 tgagtttgtttatttttgggagtctagctagttgtgcaattcagatccttactatagtatctggtatatcaatgcataacttgcaaacttgtactttgta 407  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37460766 tgagtttgtctatttttgggagtctagctagttgtgcaattcagatccttactatagtatctggtatatcaatgcataacttgcaaacttgtaccttgta 37460667  T
Q  408 caaatggtattagaaagaaacacagttgaggaaatcccatattaatctttatagaaacacagttgcttttctgatatcaaatgtttcctaatgacacaag 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37460666 caaatggtattagaaagaaacacagttgaggaaatcccatattaatctttatagaaacacagttgcttttctgacatcaaatgtttcctaatgacacaag 37460567  T
Q  508 taaatgacaaaattacctccggcggtagttaactaggcaacagtgccgctgggacccagtggtaggtaactaccgctgacaaacacctttttctatcttc 607  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37460566 taaatgacaaaattacctccagcggtagttaactaggcaacagtaccgctgggacccagtggtaggtaactaccgctgacaaacacctttttctatcttc 37460467  T
Q  608 tc 609  Q
    ||    
T  37460466 tc 37460465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 541
Target Start/End: Complemental strand, 48098200 - 48098129
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||||||| ||  |||  |||||| ||||||||||||||||| ||||||||||| || ||||||||||    
T  48098200 ttgcttttctgacatagaatacttcctattgacacaagtaaatgaccaaattacctccagcagtagttaact 48098129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 522
Target Start/End: Original strand, 21196422 - 21196474
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaatta 522  Q
    |||||||||||| ||  ||| ||||||| ||||||||||||||||||||||||    
T  21196422 ttgcttttctgacatagaatatttcctattgacacaagtaaatgacaaaatta 21196474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 29774892 - 29774820
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaacta 542  Q
    |||||||| ||| |||||||||||| |||  | ||||||||||||| |||| ||| || ||||||||||||||    
T  29774892 ttgcttttttgacatcaaatgtttcttaacaagacaagtaaatgacgaaataacccccagcggtagttaacta 29774820  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 7117975 - 7118065
Alignment:
Q  16 ttttatttctattgaagctgttgaatcacctgagctaaaagatataatgattgtttggtggtgattatggaatttcaatttagggattatt 106  Q
    ||||| |||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  7117975 ttttagttctattgaagctgttgaattatctgagctaacaaatataatgattgtttggtggtgattatgaaatttaagtttagggattatt 7118065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 3144450 - 3144353
Alignment:
Q  27 ttgaagctgttgaatcacctgagctaaaagatataatgattgtttggtggtgattatggaatttcaatttagggattattctagccgtaacttgctgg 124  Q
    |||||||||||| |||||||||||||| |||||||||||||||| | ||||||||||| |||| || | ||||||||||||||  |||||||||||||    
T  3144450 ttgaagctgttgcatcacctgagctaacagatataatgattgttcgatggtgattatgaaattgcagtctagggattattctaatcgtaacttgctgg 3144353  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 235 - 404
Target Start/End: Original strand, 7118172 - 7118344
Alignment:
Q  235 aacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgtattgtaattctaaagtgagtttgtttatttttgggagtc--- 331  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||        ||||||||||||||  ||||||||||||||  |       
T  7118172 aacaattacatgtattgtatccgcattctttatctaatttcatttattttgtaatt--------attctaaagtgagtaagtttatttttgggaagcgga 7118263  T
Q  332 --tagcta---gttgtgcaattcagatccttactatagtatct---ggtatatcaatgcataacttgcaaacttgtacttt 404  Q
      ||||||   ||||||| |||| |||||||| ||||||||||   |||||| |||||||||| ||| |||||||||||||    
T  7118264 gatagctagttgttgtgcgattctgatccttattatagtatctgcaggtataccaatgcataagttgtaaacttgtacttt 7118344  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 9317859 - 9317798
Alignment:
Q  237 caattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgtattgta 298  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||    
T  9317859 caatcacatgtattgtatcggcattctttatctaatttcatttattttgaaattgttttgta 9317798  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 463
Target Start/End: Complemental strand, 9317782 - 9317651
Alignment:
Q  332 tagctagttgtgcaattcagatccttactatagtatctggtatatcaatgcataacttgcaaacttgtact-ttgtacaaatggtattagaaagaaacac 430  Q
    ||||||||| ||| |||| |||||||| |||  ||||||||||| |||||||||| ||  |||||||||||  |||||||| |||||||| ||||||||     
T  9317782 tagctagttctgcgattctgatccttattatcatatctggtataccaatgcataagttataaacttgtactcatgtacaaagggtattaggaagaaacaa 9317683  T
Q  431 agttgaggaaatcccatattaatctttatagaa 463  Q
    || ||||| ||||| |||||||| || ||||||    
T  9317682 agctgagg-aatccaatattaattttcatagaa 9317651  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 3144372 - 3144300
Alignment:
Q  129 ttctaatcgtaacttgctggcagctccttttgttattaaactaaaccataatgtcaatgccatggtgcaaaag 201  Q
    ||||||||||||||||||||||  |||  | | |||||||| ||| |||||||||||||||||||||||||||    
T  3144372 ttctaatcgtaacttgctggcaattccagtcggtattaaacaaaagcataatgtcaatgccatggtgcaaaag 3144300  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 9326056 - 9325975
Alignment:
Q  129 ttctaatcgtaacttgctggcagctccttttgttattaaactaaaccat-aatgtcaatgccatggtgcaaaagctcctttt 209  Q
    |||||||||||| ||||||| || || |||||||||||||| ||| ||| |||||||||||||||| || |||||| |||||    
T  9326056 ttctaatcgtaaattgctggtagttcattttgttattaaacaaaagcataaatgtcaatgccatggcgcgaaagctactttt 9325975  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 9326124 - 9326032
Alignment:
Q  36 ttgaatcacctgagctaaaagatataatgattgtttggtggtgattatggaatttcaatttagggattattctagccgtaacttgctggtagtt 129  Q
    |||||||||||||||||| | |||||| |||||||||||||||| ||   ||||||| | |||| |||||||||  ||||| ||||||||||||    
T  9326124 ttgaatcacctgagctaacaaatataacgattgtttggtggtga-tacaaaatttcagtataggaattattctaatcgtaaattgctggtagtt 9326032  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 542
Target Start/End: Complemental strand, 44329779 - 44329723
Alignment:
Q  486 aaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaacta 542  Q
    |||| ||||||| || |||||||||||||| ||||||||||| ||| ||||||||||    
T  44329779 aaatatttcctattggcacaagtaaatgactaaattacctccagcgctagttaacta 44329723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 3259877 - 3259948
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||||||| ||  |||  || ||| ||||||||||||||||| |||||||| || |||||||||||||    
T  3259877 ttgcttttctgacatagaatactttctattgacacaagtaaatgaccaaattacccccagcggtagttaact 3259948  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 31297645 - 31297716
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||||||| ||  |||  |||||| ||||||||||||||||  |||||||||||  ||||||||||||    
T  31297645 ttgcttttctgacatagaatacttcctattgacacaagtaaatgatcaaattacctccaacggtagttaact 31297716  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 31416 - 31458
Alignment:
Q  499 tgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    ||||||||||||||||| |||||||| || |||||||||||||    
T  31416 tgacacaagtaaatgaccaaattacccccagcggtagttaact 31458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 542
Target Start/End: Complemental strand, 15630483 - 15630433
Alignment:
Q  492 ttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaacta 542  Q
    |||||| |||||||| |||||||| |||||| | |||||||||||||||||    
T  15630483 ttcctattgacacaaataaatgaccaaattatccccggcggtagttaacta 15630433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 541
Target Start/End: Complemental strand, 31298870 - 31298821
Alignment:
Q  492 ttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||| ||||||||||||||||| |||||||  || |||||||||||||    
T  31298870 ttcctattgacacaagtaaatgaccaaattactcccagcggtagttaact 31298821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 1241 - 1169
Alignment:
Q  36 ttgaatcacctgagctaaaagatataatgattgtttggtggtgattatggaatttcaatttagggattattct 108  Q
    |||||||||||||||||| | || ||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  1241 ttgaatcacctgagctaacaaatttaacgattgtttggtggtgattatgaaatttcaatttagggattattct 1169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 1082 - 1010
Alignment:
Q  230 attacaacaattacatgtattgtatctgcattctttatctaatttcatttattttgcaattgtattgtaattc 302  Q
    |||| ||||| || |||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||||    
T  1082 attataacaactatatgtattgtatcggcattctttatataattttatttattttgcaattgttttgtaattc 1010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 463
Target Start/End: Complemental strand, 945 - 887
Alignment:
Q  404 tgtacaaatggtattagaaagaaacacagttgaggaaatcccatattaatctttatagaa 463  Q
    |||||| ||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||    
T  945 tgtacagatggtattagaaagaaacaaagttgagg-aatctcatgttaatcttcatagaa 887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 1146 - 1110
Alignment:
Q  158 ttgttattaaactaaaccataatgtcaatgccatggt 194  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  1146 ttgttattaaacaaaaccataatgtcgatgccatggt 1110  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 2897956 - 2898027
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||| ||| ||  ||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  2897956 ttgcttttttgacattgaatatttcctattgacacaagtaaatgaccaaattacctccagcggtagttaact 2898027  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 541
Target Start/End: Complemental strand, 16931325 - 16931254
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||| ||| ||  ||| ||||||| ||||| ||||||||||| |||||||| || |||||||||||||    
T  16931325 ttgcttttttgacatagaatatttcctattgacataagtaaatgaccaaattacccccagcggtagttaact 16931254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 541
Target Start/End: Complemental strand, 17646680 - 17646609
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||||||| ||  |||  |||||  ||||||||||||||||| |||||||| || |||||||||||||    
T  17646680 ttgcttttctgacatagaatacttcctgttgacacaagtaaatgaccaaattacccccagcggtagttaact 17646609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 6808003 - 6807934
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaa 539  Q
    |||||||||||| ||||||  |||| || ||||||||||||||||  |||||| | || |||||||||||    
T  6808003 ttgcttttctgaaatcaaaaatttcatattgacacaagtaaatgatcaaattatcaccagcggtagttaa 6807934  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 541
Target Start/End: Original strand, 17644759 - 17644808
Alignment:
Q  492 ttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||| ||||||||||||||||  |||||||| ||| ||||||||||||    
T  17644759 ttcctattgacacaagtaaatgatcaaattacccccgtcggtagttaact 17644808  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 541
Target Start/End: Original strand, 39939988 - 39940036
Alignment:
Q  492 ttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||| ||||||||||||||||| |||||||||||  ||||||||||||    
T  39939988 ttcctattgacacaagtaaatgaccaaattacctcc-acggtagttaact 39940036  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 542
Target Start/End: Original strand, 17851866 - 17851934
Alignment:
Q  474 ttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaacta 542  Q
    |||| ||| |||||| |||| ||||| ||| | | |||||||||||||||||||  |||||||||||||    
T  17851866 ttttttgacatcaaaagttttctaataacatatggaaatgacaaaattacctccaacggtagttaacta 17851934  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 27809812 - 27809768
Alignment:
Q  497 aatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    ||||||||||||||||||  |||||||| ||| ||||||||||||    
T  27809812 aatgacacaagtaaatgatcaaattacccccgacggtagttaact 27809768  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 542
Target Start/End: Original strand, 44374023 - 44374068
Alignment:
Q  497 aatgacacaagtaaatgacaaaattacctccggcggtagttaacta 542  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||    
T  44374023 aatgacacaagtaaatgactaaattacctccaacggtagttaacta 44374068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 541
Target Start/End: Complemental strand, 8816634 - 8816592
Alignment:
Q  499 tgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||| |||||||| ||||||||||| |||||||||||||    
T  8816634 tgacacaaataaatgactaaattacctccagcggtagttaact 8816592  T

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Target: scaffold0915 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0915
Description:

Target: scaffold0915; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 539
Target Start/End: Complemental strand, 861 - 793
Alignment:
Q  471 tgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaa 539  Q
    |||| |||||| |||||| |||||||||  ||||||||||||||| |||||||| ||  ||||||||||    
T  861 tgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaa 793  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 471 - 539
Target Start/End: Complemental strand, 28985355 - 28985287
Alignment:
Q  471 tgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaa 539  Q
    |||| |||||| |||||| |||||||||  ||||||||||||||| |||||||| ||  ||||||||||    
T  28985355 tgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaa 28985287  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 541
Target Start/End: Complemental strand, 31602982 - 31602911
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||| ||||||  ||| ||| ||| ||||||||||||||||  |||||||| || |||||||||||||    
T  31602982 ttgcttttttgatattgaatattttctattgacacaagtaaatgatcaaattacccccagcggtagttaact 31602911  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 542
Target Start/End: Complemental strand, 22019671 - 22019615
Alignment:
Q  486 aaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaacta 542  Q
    |||| ||||||| || |||||||||||||| ||||||||||| ||| ||||||||||    
T  22019671 aaatatttcctattggcacaagtaaatgactaaattacctccagcgctagttaacta 22019615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 541
Target Start/End: Complemental strand, 33203500 - 33203458
Alignment:
Q  499 tgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    ||||||||||||||||| ||||||||||||| || ||||||||    
T  33203500 tgacacaagtaaatgaccaaattacctccggtgggagttaact 33203458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 37505066 - 37504995
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaacta 542  Q
    |||||||| ||||||  |||  |||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  37505066 ttgcttttttgatattgaatacttcctattgacacaagtaaatgaccaaatta-ctccagcggtagttaacta 37504995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 546
Target Start/End: Original strand, 48898887 - 48898963
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaactaggca 546  Q
    |||||||||||| ||||||| |||| || ||||| ||||||||||| ||||||||  |  |||||||||||| ||||    
T  48898887 ttgcttttctgacatcaaatatttcatattgacaaaagtaaatgaccaaattaccctcatcggtagttaactgggca 48898963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 541
Target Start/End: Complemental strand, 16002682 - 16002640
Alignment:
Q  499 tgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    ||||||||||||||||  ||||||||||| |||||||||||||    
T  16002682 tgacacaagtaaatgatcaaattacctccagcggtagttaact 16002640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 9617214 - 9617285
Alignment:
Q  470 ttgcttttctgatatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||| ||| ||| |||  |||||| ||||||||||||||||  ||||||||||  |||||||||||||    
T  9617214 ttgcttttttgacatcgaatacttcctattgacacaagtaaatgatcaaattacctctagcggtagttaact 9617285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 35142862 - 35142916
Alignment:
Q  487 aatgtttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||| |||||| ||||||||||||||||| |||||||| |  |||||||||||||    
T  35142862 aatgcttcctattgacacaagtaaatgaccaaattacccctagcggtagttaact 35142916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 541
Target Start/End: Original strand, 38193391 - 38193440
Alignment:
Q  492 ttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||| ||||||||||||||||| ||| |||| || |||||||||||||    
T  38193391 ttcctattgacacaagtaaatgaccaaactacccccagcggtagttaact 38193440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 541
Target Start/End: Complemental strand, 38194591 - 38194542
Alignment:
Q  492 ttcctaatgacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||| ||||||||||||||||| |||||||  || |||||||||||||    
T  38194591 ttcctattgacacaagtaaatgaccaaattactcccagcggtagttaact 38194542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 55686288 - 55686248
Alignment:
Q  499 tgacacaagtaaatgacaaaattacctccggcggtagttaa 539  Q
    ||||||||||||||||  ||||||||||| |||||||||||    
T  55686288 tgacacaagtaaatgatcaaattacctccagcggtagttaa 55686248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 127239 - 127280
Alignment:
Q  500 gacacaagtaaatgacaaaattacctccggcggtagttaact 541  Q
    |||||||||||||||| |||||||| || |||||||||||||    
T  127239 gacacaagtaaatgaccaaattacccccagcggtagttaact 127280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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