View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4816-Insertion-3 (Length: 233)
Name: NF4816-Insertion-3
Description: NF4816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4816-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 35603478 - 35603704
Alignment:
| Q |
7 |
aatagtttcgtaggatgtgtccttgttgaagcaatgtcggattttccaaaatgtatgacctgattaaatgcatgctcatggtgaaaatatatgtctttga |
106 |
Q |
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| T |
35603478 |
aatagtttcgtaggatgtgtccttgctgaagcaatgtcggattttccaaaatgtatggcctgattaaatgcatgctcatggtgaaaatatatgtctttga |
35603577 |
T |
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| Q |
107 |
aactttgagctttcaaagtattggctttgtnnnnnnnnggaaattatcatcaacaaataaaaaatggttgattgatagagtagtgccatagatactagtc |
206 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35603578 |
aactttgagctttcaaagtattggctttgtaaaaaaaaggaaattatcatcaacaaataaaaaatggttgattgatagagtagtgccatagatacgagtc |
35603677 |
T |
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| Q |
207 |
tcataaagcttaccctaaatctcgtta |
233 |
Q |
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| T |
35603678 |
tcataaagcttaccctaaatctcgtta |
35603704 |
T |
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