View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4816_low_1 (Length: 456)

Name: NF4816_low_1
Description: NF4816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4816_low_1
NF4816_low_1
[»] chr6 (1 HSPs)
chr6 (14-400)||(34394989-34395377)
[»] scaffold0330 (2 HSPs)
scaffold0330 (52-257)||(936-1135)
scaffold0330 (333-381)||(813-861)
[»] chr2 (2 HSPs)
chr2 (52-115)||(13517080-13517143)
chr2 (52-115)||(7707241-7707304)
[»] chr3 (1 HSPs)
chr3 (52-106)||(10950533-10950587)
[»] chr5 (1 HSPs)
chr5 (71-114)||(19964284-19964327)
[»] chr1 (3 HSPs)
chr1 (68-119)||(25425669-25425719)
chr1 (53-120)||(16974175-16974242)
chr1 (45-89)||(10683561-10683605)
[»] scaffold1668 (1 HSPs)
scaffold1668 (45-115)||(618-688)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 400
Target Start/End: Original strand, 34394989 - 34395377
Alignment:
Q  14 atatataacttaatgaaagacttgattttattaaatttcaacaaacaaataaaagttcatcttagaaccttaatcaataggcgtttagttactcatagta 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||    
T  34394989 atatataacttaatgaaagacttgattttattaaatt-caacaaacaaatagaagttcatcttagaaccctaatcaataggcgtttagttactcatggta 34395087  T
Q  114 accaaaagaagaggtttagaaaagactactctataaatgctcctaacgcttgccttcctcttgaactaccgtattcaaaatgcgaatttgttaatgagag 213  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  34395088 accaaaagaagaggtttagaaaagactactctgttaatgctcctaacgcttgccttcctcttgaaccaccatgttcaaaatgcgaatttgttaatgagag 34395187  T
Q  214 ttcatatatttataggcaacttttcatatgggtttgggttgaaatactgggtttttatctccaaatctatagag---aaaaaacatttatcnnnnnnnnc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||   ||| ||||||||||        |    
T  34395188 ttcatatatttataggcaacttttcatatgggtttgggttgaaatactaggttttcatctccaaatctatagagtaaaaacaacatttatcttttttttc 34395287  T
Q  311 tctacctcacgcgcaccccacacgaagggacacacgctgcacatgagtgctagaaacatagattttgttcttcatgacatgccatcttac 400  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34395288 tctgcctcacgcgcaccccacacgaagggacacacgctgcacatgagtgctagaaacatagattttgttcttcatgatatgccatcttac 34395377  T

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Target: scaffold0330 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 257
Target Start/End: Complemental strand, 1135 - 936
Alignment:
Q  52 caacaaacaaataaaagttcatcttagaaccttaatcaataggcgtttagttactcatagtaaccaaaagaagaggttt-agaaaagactactctataaa 150  Q
    ||||||||||||| | ||| ||||||||||| |||| |||||| |||||||||||||| ||| || |||||  |  ||| || |||||||||||| |  |    
T  1135 caacaaacaaatagatgtttatcttagaaccataatgaataggtgtttagttactcatggta-cctaaagacaaattttgaggaaagactactctgttga 1037  T
Q  151 tgctcctaacgcttgccttcctcttgaactaccgtattcaaaatgcgaatttgttaatgagagttcatatatttataggcaacttttcatatgggtttgg 250  Q
    ||||      |||||| |||||||||||| | |   ||   |||| ||| || ||||||||||||| | ||||||||||||||||||| |||||||||||    
T  1036 tgct------gcttgcattcctcttgaaccatcaagttttgaatgagaaatttttaatgagagttcttgtatttataggcaacttttcttatgggtttgg 943  T

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Target: scaffold0330; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 861 - 813
Alignment:
Q  333 cgaagggacacacgctgcacatgagtgctagaaacatagattttgttct 381  Q
    ||||||||||||| || ||| |||||||||||| | |||||||||||||    
T  861 cgaagggacacacactacacgtgagtgctagaagcgtagattttgttct 813  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 13517143 - 13517080
Alignment:
Q  52 caacaaacaaataaaagttcatcttagaaccttaatcaataggcgtttagttactcatagtaac 115  Q
    ||||||||||||| |  ||||||| |||||||||||||||||| |||||||||||||| |||||    
T  13517143 caacaaacaaatagagattcatctcagaaccttaatcaataggtgtttagttactcatggtaac 13517080  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 7707241 - 7707304
Alignment:
Q  52 caacaaacaaataaaagttcatcttagaaccttaatcaataggcgtttagttactcatagtaac 115  Q
    ||||||| ||||||| ||| ||||||||||| |||||||  || |||||||||||||| |||||    
T  7707241 caacaaataaataaaggttgatcttagaaccctaatcaaagggtgtttagttactcatggtaac 7707304  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 10950533 - 10950587
Alignment:
Q  52 caacaaacaaataaaagttcatcttagaaccttaatcaataggcgtttagttact 106  Q
    ||||||||||||| | |||||||||||||||||||| |||||| |||||||||||    
T  10950533 caacaaacaaatagaggttcatcttagaaccttaattaataggtgtttagttact 10950587  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 19964284 - 19964327
Alignment:
Q  71 catcttagaaccttaatcaataggcgtttagttactcatagtaa 114  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  19964284 catcttagaaccttaatcaataggtgtttagttactcatcgtaa 19964327  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 25425669 - 25425719
Alignment:
Q  68 gttcatcttagaaccttaatcaataggcgtttagttactcatagtaaccaaa 119  Q
    |||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  25425669 gttcatcttagaacct-aatcaataggtgtttagttactcattgtaaccaaa 25425719  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 16974242 - 16974175
Alignment:
Q  53 aacaaacaaataaaagttcatcttagaaccttaatcaataggcgtttagttactcatagtaaccaaaa 120  Q
    |||||||||||| | ||| |||||| ||| |||||||||||| ||||||||| |||| ||||| ||||    
T  16974242 aacaaacaaatagaggtttatcttataactttaatcaataggtgtttagttattcatggtaactaaaa 16974175  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 10683605 - 10683561
Alignment:
Q  45 taaatttcaacaaacaaataaaagttcatcttagaaccttaatca 89  Q
    |||||| ||||||| ||| ||| ||||||||||||||||||||||    
T  10683605 taaattccaacaaataaacaaaggttcatcttagaaccttaatca 10683561  T

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Target: scaffold1668 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 688 - 618
Alignment:
Q  45 taaatttcaacaaacaaataaaagttcatcttagaaccttaatcaataggcgtttagttactcatagtaac 115  Q
    |||| ||||||||| ||||| | ||| ||| ||||||| ||||||| ||| |||||||||||||| |||||    
T  688 taaaattcaacaaataaatagaggttgatcatagaaccctaatcaaaaggtgtttagttactcatggtaac 618  T

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