View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4816_low_2 (Length: 339)
Name: NF4816_low_2
Description: NF4816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4816_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 42852459 - 42852146
Alignment:
| Q |
17 |
acaagagactgagacggacataagggatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatat |
116 |
Q |
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| T |
42852459 |
acaagagactgagacggacataagggatgatgatgaactacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatat |
42852360 |
T |
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| Q |
117 |
ttagatagttttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaatt |
216 |
Q |
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| T |
42852359 |
ttagatggttttacttcacatgctttgtttatattctctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaatt |
42852260 |
T |
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| Q |
217 |
ctcatatttttaatcannnnnnnatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaag |
316 |
Q |
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| T |
42852259 |
ctcatatttttaatcatttttttatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaag |
42852160 |
T |
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| Q |
317 |
tgatgatgatgatg |
330 |
Q |
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|||||||||||||| |
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| T |
42852159 |
tgatgatgatgatg |
42852146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 328
Target Start/End: Complemental strand, 42852630 - 42852424
Alignment:
| Q |
121 |
atagttttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctca |
220 |
Q |
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| T |
42852630 |
atagtttttcttcccatactttgttcatattccctat--cattcaaacttggatgttgtatggtggcatataatggtatccacaacatatcaaattctca |
42852533 |
T |
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| Q |
221 |
tattttt--aatcannnnnnnatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtg |
318 |
Q |
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| T |
42852532 |
tatttttttaatcatgtttt-atgtataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataaggg |
42852434 |
T |
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| Q |
319 |
atgatgatga |
328 |
Q |
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| T |
42852433 |
atgatgatga |
42852424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 42852183 - 42852092
Alignment:
| Q |
17 |
acaagagactgagacggacataagggatgatgatga---actacctgcaatggaagacaatacaaacaagatacaaccttttgagccgtatg |
105 |
Q |
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| T |
42852183 |
acaagagaatgagacagacacaagtgatgatgatgatggactacctccactggaagccaatacaaacaggatacaaccttttgagctgtatg |
42852092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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