View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4817-Insertion-1 (Length: 976)

Name: NF4817-Insertion-1
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4817-Insertion-1
NF4817-Insertion-1
[»] scaffold0477 (2 HSPs)
scaffold0477 (533-976)||(7164-7609)
scaffold0477 (112-516)||(7662-8081)
[»] chr6 (3 HSPs)
chr6 (533-976)||(4640506-4640951)
chr6 (112-516)||(4640035-4640453)
chr6 (532-592)||(17759061-17759121)
[»] scaffold0288 (2 HSPs)
scaffold0288 (290-411)||(16339-16460)
scaffold0288 (303-454)||(15733-15885)
[»] chr3 (3 HSPs)
chr3 (898-976)||(27734808-27734887)
chr3 (527-592)||(1686270-1686335)
chr3 (8-70)||(34387401-34387461)
[»] chr2 (3 HSPs)
chr2 (290-377)||(34474229-34474317)
chr2 (199-259)||(34474090-34474149)
chr2 (522-592)||(6396287-6396357)
[»] chr8 (1 HSPs)
chr8 (3-68)||(29308676-29308741)
[»] chr7 (1 HSPs)
chr7 (880-956)||(24453830-24453907)
[»] chr5 (1 HSPs)
chr5 (8-68)||(9411262-9411322)
[»] chr1 (2 HSPs)
chr1 (528-592)||(31928641-31928705)
chr1 (517-574)||(48259532-48259589)
[»] scaffold0014 (1 HSPs)
scaffold0014 (535-592)||(81284-81341)


Alignment Details
Target: scaffold0477 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 533 - 976
Target Start/End: Complemental strand, 7609 - 7164
Alignment:
533 gaggtttgaaaaggtaaaggtaaaattttgtgggactacaaattgtagatggatgcaaggtcaagcagctaggttgcggatggataaatagacaatacta 632  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||    
7609 gaggtttgaagaggtaaaggtcaaatattgtgggactacaaattgtagatgaatgcaaggtcaagtagctaggtggcggatggataaatagacattacta 7510  T
633 ctgattttaagttaatgtggagatttgtgatgattgacttgaaaattagcaaaaaatattcgatggannnnnnnnagtgttcacggctgccattttgtgc 732  Q
    |||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||| |||| | |        ||||||||||||| |||||||||||    
7509 ctgattttaagtcaaggtggagatttgtgatgattgatttgaaaattagcataaaataatcgaagaattttgtttagtgttcacggct-ccattttgtgc 7411  T
733 ctaggcgtggcatttttgcgcccaggcgtataacactagatttgcttctgccagtttgcgctcaagcgtggaattttgtgcccaggtgcaacatctaggc 832  Q
    ||||| |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||    
7410 ctaggtgtggtatttttccgcccaggcgtataccactagatttgcttctgccagtttgcgctcaagcgtggaattttgtgcccaggtgcagcgcctaggc 7311  T
833 ttagcgggacaacaatatatataaaaatttgtttcttctg-ttttggaaagagtgaaaagcaagggttttgcagctaacactaaaactagggtttagaaa 931  Q
    |||||||||||||| ||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
7310 ttagcgggacaacagtatatataaatttttgtttcttctgtttttggcaagagtgaaaagcaagggttttgcagctaacactaaaactagggtttagaga 7211  T
932 g-attcttaagctttctcttggtaagacttctagg-ttaggagaatc 976  Q
    | |||||||||||||||||||||||||  |||||| |||||||||||    
7210 gaattcttaagctttctcttggtaagagctctaggtttaggagaatc 7164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 112 - 516
Target Start/End: Complemental strand, 8081 - 7662
Alignment:
112 taacaaaaaattgcatagtaccttgtgtgaggatatatcatccgcgagtctgccaata-------caaccactgaaaat-ccaaaaactcttttgttgaa 203  Q
    |||||||| ||||  || |||||| |||||||||||||||||||||||||||||||||       |||||| ||||||| |||||||||||||  |||||    
8081 taacaaaacattgggtaataccttatgtgaggatatatcatccgcgagtctgccaatagccaatacaaccattgaaaataccaaaaactctttgtttgaa 7982  T
204 aattttccaagcacaacaaaagatattatttgaaagtgg---gatggtagaagatataaaaatgtgaatctataaaaatatgatcgtgtcaatttataaa 300  Q
    ||||||||||||||||| || ||||||||| ||| ||||   ||||||||||||||||| | ||||||| ||||||||||||||||||||||| ||||||    
7981 aattttccaagcacaacgaa-gatattatt-gaatgtggcgggatggtagaagatataagattgtgaatttataaaaatatgatcgtgtcaatgtataaa 7884  T
301 actg--aattaatcaaaatatggat--tgatagttaagtactgaatgataaaaataagcattgataagatttgaaatatatatgagaataggaagcctgc 396  Q
    ||||  |||||||||||||||||||  |||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||    
7883 actgtgaattaatcaaaatatggatattgatagttaagtccagaatgataaaagtaagcattgataagtttttaaatatatattagaataggaagcctgc 7784  T
397 aacttctttgatataccgt---agcataaagttcgatttcttgttctccaacaatgtcatctctattttctcctatcattacgattgtattaaatacaac 493  Q
    ||||| |||||||| ||||   |  ||||||||||||||||| ||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||    
7783 aacttgtttgatatgccgtataactataaagttcgatttcttattctctaacaatgtcatctcta-tttatcctatgattacgattgtattaaatacaac 7685  T
494 tttcatggaacttgtggaactac 516  Q
    |||||||||||||||||||||||    
7684 tttcatggaacttgtggaactac 7662  T

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Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 533 - 976
Target Start/End: Original strand, 4640506 - 4640951
Alignment:
533 gaggtttgaaaaggtaaaggtaaaattttgtgggactacaaattgtagatggatgcaaggtcaagcagctaggttgcggatggataaatagacaatacta 632  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||    
4640506 gaggtttgaagaggtaaaggtcaaatattgtgggactacaaattgtagatgaatgcaaggtcaagtagctaggtggcggatggataaatagacattacta 4640605  T
633 ctgattttaagttaatgtggagatttgtgatgattgacttgaaaattagcaaaaaatattcgatggannnnnnnnagtgttcacggctgccattttgtgc 732  Q
    |||||||||||| || ||||||||||||||||||||| ||||||||||||| |||||| |||| | |        ||||||||||||| |||||||||||    
4640606 ctgattttaagtcaaggtggagatttgtgatgattgatttgaaaattagcataaaataatcgaagaattttgtttagtgttcacggct-ccattttgtgc 4640704  T
733 ctaggcgtggcatttttgcgcccaggcgtataacactagatttgcttctgccagtttgcgctcaagcgtggaattttgtgcccaggtgcaacatctaggc 832  Q
    ||||| |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||    
4640705 ctaggtgtggtatttttccgcccaggcgtataccactagatttgcttctgccagtttgcgctcaagcgtggaattttgtgcccaggtgcagcgcctaggc 4640804  T
833 ttagcgggacaacaatatatataaaaatttgtttcttctg-ttttggaaagagtgaaaagcaagggttttgcagctaacactaaaactagggtttagaaa 931  Q
    |||||||||||||| ||||||||||  ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
4640805 ttagcgggacaacagtatatataaatttttgtttcttctgtttttggcaagagtgaaaagcaagggttttgcagctaacactaaaactagggtttagaga 4640904  T
932 g-attcttaagctttctcttggtaagacttctagg-ttaggagaatc 976  Q
    | |||||||||||||||||||||||||  |||||| |||||||||||    
4640905 gaattcttaagctttctcttggtaagagctctaggtttaggagaatc 4640951  T

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Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 112 - 516
Target Start/End: Original strand, 4640035 - 4640453
Alignment:
112 taacaaaaaattgcatagtaccttgtgtgaggatatatcatccgcgagtctgccaata-------caaccactgaaaatccaaaaactcttttgttgaaa 204  Q
    |||||||| ||||  || |||||| |||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||  ||||||    
4640035 taacaaaacattgggtaataccttatgtgaggatatatcatccgcgagtctgccaatagccaatacaaccattgaaaatccaaaaactctttgtttgaaa 4640134  T
205 attttccaagcacaacaaaagatattatttgaaagtgg---gatggtagaagatataaaaatgtgaatctataaaaatatgatcgtgtcaatttataaaa 301  Q
    |||||||||||||||| || ||||||||| ||| ||||   ||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||    
4640135 attttccaagcacaacgaa-gatattatt-gaatgtggcgggatggtagaagatataagattgtgaatttataaaaatatgatcgtgtcaatgtataaaa 4640232  T
302 ctg--aattaatcaaaatatggat--tgatagttaagtactgaatgataaaaataagcattgataagatttgaaatatatatgagaataggaagcctgca 397  Q
    |||  |||||||||||||||||||  |||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||    
4640233 ctgtgaattaatcaaaatatggatattgatagttaagtccagaatgataaaagtaagcattgataagtttttaaatatatattagaataggaagcctgca 4640332  T
398 acttctttgatataccgt---agcataaagttcgatttcttgttctccaacaatgtcatctctattttctcctatcattacgattgtattaaatacaact 494  Q
    |||| |||||||| ||||   |  ||||||||||||||||| ||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
4640333 acttgtttgatatgccgtataactataaagttcgatttcttattctctaacaatgtcatctcta-tttatcctatgattacgattgtattaaatacaact 4640431  T
495 ttcatggaacttgtggaactac 516  Q
    ||||||||||||||||||||||    
4640432 ttcatggaacttgtggaactac 4640453  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 532 - 592
Target Start/End: Original strand, 17759061 - 17759121
Alignment:
532 cgaggtttgaaaaggtaaaggtaaaattttgtgggactacaaattgtagatggatgcaagg 592  Q
    |||||||||||||||||||||| |||  |||||| |||||||| ||||| || ||||||||    
17759061 cgaggtttgaaaaggtaaaggtgaaaacttgtggaactacaaagtgtagttgaatgcaagg 17759121  T

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Target: scaffold0288 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 411
Target Start/End: Original strand, 16339 - 16460
Alignment:
290 caatttataaaactg--aattaatcaaaatatggattgatagttaagtactgaatgataaaaataagcattgataagatttgaaatatatatgagaatag 387  Q
    |||||||||||||||  |||||||||||| || | ||||||||| ||| |||||| |||||||||| |||||   || |||||||||||||| ||| | |    
16339 caatttataaaactgtaaattaatcaaaacatagtttgatagttgagttctgaattataaaaataaacattg--cagttttgaaatatatattagatttg 16436  T
388 gaagcctgcaacttctttgatata 411  Q
    ||||||| |||||| |||| ||||    
16437 gaagcctacaacttgtttggtata 16460  T

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Target: scaffold0288; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 303 - 454
Target Start/End: Complemental strand, 15885 - 15733
Alignment:
303 tgaattaatcaaaatatggattgatagttaagtactgaatgataaaaataagcattgat-aagatttgaaatatatatgagaataggaagcctgcaactt 401  Q
    ||||||||||| |||||  ||| ||||||||||  |||||| ||||||||| ||||||| ||  ||| |||||||||| |||||  ||||||| |  |||    
15885 tgaattaatcagaatatacattaatagttaagttttgaatggtaaaaataaacattgatcaatttttaaaatatatattagaattagaagcctacggctt 15786  T
402 ctttgatataccgtagcataaagttcgatttcttgttctccaacaatgtcatc 454  Q
     |||||||||  |  |||  || ||||||||||  || |||||||||||||||    
15785 gtttgatatattgccgcaccaatttcgatttctcattttccaacaatgtcatc 15733  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 898 - 976
Target Start/End: Complemental strand, 27734887 - 27734808
Alignment:
898 ttttgcagctaacactaaaactagggtttagaaagatt-cttaagctttctcttggtaagacttctaggttaggagaatc 976  Q
    ||||| ||| |||||||||||||||||| |||||| || |||| | |||||||||||||||  |||||||||||||||||    
27734887 ttttgtagccaacactaaaactagggttaagaaagttttcttaggttttctcttggtaagagctctaggttaggagaatc 27734808  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 1686270 - 1686335
Alignment:
527 tatttcgaggtttgaaaaggtaaaggtaaaattttgtgggactacaaattgtagatggatgcaagg 592  Q
    |||| ||||||||| | |||||||||| |||  ||||||||||||||| ||||| |||||||||||    
1686270 tattccgaggtttgtagaggtaaaggtgaaagcttgtgggactacaaagtgtagttggatgcaagg 1686335  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 34387461 - 34387401
Alignment:
8 aatcaaccatttgatcagaaaaggagatgggactgcacaaagagggcagaagaggatccaatt 70  Q
    ||||||||||| ||||||| |||||||||  |||||||||| | | |||||||||||||||||    
34387461 aatcaaccattggatcagagaaggagatg--actgcacaaataagacagaagaggatccaatt 34387401  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 34474229 - 34474317
Alignment:
290 caatttataaaactg--aattaatcaaaatatggattgatagttaagtactgaatgataaaaataagcattgataagatttgaaatatat 377  Q
    ||||||||| |||||  ||||||||||||||| ||| |||| |||| |||||||| |||||||  ||||||||| || ||||||||||||    
34474229 caatttatagaactgtaaattaatcaaaatattgat-gataattaactactgaatcataaaaagcagcattgatcagttttgaaatatat 34474317  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 34474090 - 34474149
Alignment:
199 ttgaaaattttccaagcacaacaaaagatattatttgaaagtgggatggtagaagatataa 259  Q
    ||||||||| ||||||  |||| |||||||||||| ||||||||||| |||||||||||||    
34474090 ttgaaaattctccaagtccaacgaaagatattatt-gaaagtgggattgtagaagatataa 34474149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 522 - 592
Target Start/End: Complemental strand, 6396357 - 6396287
Alignment:
522 gaagatatttcgaggtttgaaaaggtaaaggtaaaattttgtgggactacaaattgtagatggatgcaagg 592  Q
    ||||||||| ||||||||||| || ||||||| |||  ||||| ||||| ||| ||||| |||||||||||    
6396357 gaagatattccgaggtttgaagagataaaggtgaaagcttgtgagactataaagtgtagttggatgcaagg 6396287  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 29308741 - 29308676
Alignment:
3 caacaaatcaaccatttgatcagaaaaggagatgggactgcacaaagagggcagaagaggatccaa 68  Q
    |||| ||||||||||| ||||||||||||| | ||| ||||||||| | ||||| |||||||||||    
29308741 caaccaatcaaccattggatcagaaaaggaaagggggctgcacaaaaaaggcaggagaggatccaa 29308676  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 880 - 956
Target Start/End: Original strand, 24453830 - 24453907
Alignment:
880 aagagtgaaaagcaagggttttgcagctaacactaaaactagggtttagaaag-attcttaagctttctcttggtaag 956  Q
    ||||||||| | |||||||||| |||| ||||||||||| |||||||||| || ||||||| | ||||||||| ||||    
24453830 aagagtgaagaacaagggttttacagccaacactaaaaccagggtttagagagaattcttaggttttctcttgttaag 24453907  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 9411322 - 9411262
Alignment:
8 aatcaaccatttgatcagaaaaggagatgggactgcacaaagagggcagaagaggatccaa 68  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| |  |||| |||||||||||    
9411322 aatcaaccattggatcagaaaaggagagggggctgcacaaaaaatgcaggagaggatccaa 9411262  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 592
Target Start/End: Complemental strand, 31928705 - 31928641
Alignment:
528 atttcgaggtttgaaaaggtaaaggtaaaattttgtgggactacaaattgtagatggatgcaagg 592  Q
    ||||||||||||||| |||||||||| |||  |||||| |||||||| || || |||||||||||    
31928705 atttcgaggtttgaagaggtaaaggtgaaaacttgtggaactacaaagtgcagttggatgcaagg 31928641  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 574
Target Start/End: Original strand, 48259532 - 48259589
Alignment:
517 aggcagaagatatttcgaggtttgaaaaggtaaaggtaaaattttgtgggactacaaa 574  Q
    |||| |||||| |||||||||||||| ||||||  || |||| |||||||||||||||    
48259532 aggcggaagatgtttcgaggtttgaagaggtaagagttaaatcttgtgggactacaaa 48259589  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 81341 - 81284
Alignment:
535 ggtttgaaaaggtaaaggtaaaattttgtgggactacaaattgtagatggatgcaagg 592  Q
    |||||||| |||||||| |||||  |||||| |||||||| ||||| |||||||||||    
81341 ggtttgaagaggtaaagttaaaaacttgtggaactacaaagtgtagttggatgcaagg 81284  T

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