View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817-Insertion-2 (Length: 646)
Name: NF4817-Insertion-2
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 225 - 622
Target Start/End: Original strand, 19533325 - 19533734
Alignment:
| Q |
225 |
ctgagaagaaaaaataaacatggagagagaatggaagtacatttcagatgatgataaagttgttgaacaagagggtatagaaacattgagatgagaaggg |
324 |
Q |
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| T |
19533325 |
ctgagaagaaaaaataaacatggagagagaatggaagtacatttcagatgatgatgaagttgttgaacaagagggtatagaaacattaagatgagaaggg |
19533424 |
T |
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| Q |
325 |
tgaagaacactataaatcatgatgaatttgttgaacaataaagtacatagagactgagaaaagagccgctggtgtgtgttttggtgaagaacactacaac |
424 |
Q |
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| T |
19533425 |
tgaagaacactataaatcatgatgaatttattgaacaataaagtacatagagactgagaaaagagccgctggtgtatgttttggtgaagaacactacaac |
19533524 |
T |
|
| Q |
425 |
ttaacctttgaataattgtggaagtttatgtggatctacaagcctttgagcaaatttgatgcaattgcaaatttaca-nnnnnnnnngggaatatgaata |
523 |
Q |
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| T |
19533525 |
tcaacctttgaataattgtggaagtttatgtggatctacaagcctttgagcaaatttgatgcaattgcaaatttacattttttttttgggaatatgaata |
19533624 |
T |
|
| Q |
524 |
tattttttc-----------cattgttgtaaaataaagagaaggtgtttgtttgtgtggagaagaagcagcagcttgaaggattacgggagagagaaaag |
612 |
Q |
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| T |
19533625 |
tattttttcgattgttgtaatattgttgtaaaataaagagaaggtgtttgtttgtgtggagaagaagcagcagcttgaaggattacgtgagagagaaaag |
19533724 |
T |
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| Q |
613 |
agagatgggg |
622 |
Q |
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| T |
19533725 |
agagatgggg |
19533734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 19533104 - 19533250
Alignment:
| Q |
9 |
aggggtggacatcgggcggtctcggtcggatttcgggtgaaaacctccaatacaaaggtaaccgcgggtgggaatatagcacccatcttcgtccgtttaa |
108 |
Q |
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| T |
19533104 |
aggggtggacatcgggcggtctcggtcggatttcgggtgaaaaaccccaatccgaaggtaaccgcgggtgggaatatagcacccatctccgtctg-ttaa |
19533202 |
T |
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| Q |
109 |
gcttgcggtttatttcggtgtcggtctcgtcggttgacggtttattcg |
156 |
Q |
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| T |
19533203 |
gcttgcggtttatttcggtgtcggtctcgtcggttgacggtttcttcg |
19533250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 24214358 - 24214513
Alignment:
| Q |
30 |
tcggtcggatttcgggtgaaaacctccaatacaaaggtaa-ccgcgggtgggaatatagcacccatcttcgtccgtttaagcttgcggtttatttcggtg |
128 |
Q |
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| T |
24214358 |
tcggtcggatttcgggtgaaaaacctcaatccgaaggcaaaccgcgggtgggaatatatcacccatttccgtccgtttaagctaacggttaacttcggta |
24214457 |
T |
|
| Q |
129 |
tcggtctcgtcggttgacggtttattcgaacggtttctttggatatttcaaagcct |
184 |
Q |
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| T |
24214458 |
tcggttttgtcggttgacagtttactcggacggttttttcggattcttcaaagcct |
24214513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 8e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 43108860 - 43109032
Alignment:
| Q |
9 |
aggggtggacatcgggcggtctcggtcggatttcgggtgaaaacctccaatacaaaggtaaccgcgggtgggaatatagcacccatcttcgtccgtttaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
43108860 |
aggggtggacatcgggcggtctcggtcggatttcgggtgaaaaaccccaatccgaaggtaactgcgggtgggaatatagcacccatctccgtccgtttaa |
43108959 |
T |
|
| Q |
109 |
gcttgcggtttatttcggtgtcggtctcgtcggttgacggtttattcgaacggtttctttggatatttcaaag |
181 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |
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| T |
43108960 |
gcttgtggtttatttcggtgtcggtctcgtcggttgacggtttattcggacagtttcttcggatatttcaaag |
43109032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 40158476 - 40158631
Alignment:
| Q |
30 |
tcggtcggatttcgggtgaaaacctccaatacaaaggtaa-ccgcgggtgggaatatagcacccatcttcgtccgtttaagcttgcggtttatttcggtg |
128 |
Q |
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|||||||||||| ||||||||| | |||| | |||| || ||||||||||||||||| ||||||| | |||||||||||||| ||||| | |||||| |
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| T |
40158476 |
tcggtcggattttgggtgaaaaacctcaatccgaaggcaaaccgcgggtgggaatatatcacccatttccgtccgtttaagctaacggttaacttcggta |
40158575 |
T |
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| Q |
129 |
tcggtctcgtcggttgacggtttattcgaacggtttctttggatatttcaaagcct |
184 |
Q |
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||||| | |||||||||||||||| ||| ||||||| || |||| |||||||||| |
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| T |
40158576 |
tcggttttgtcggttgacggtttactcggacggttttttcggattcttcaaagcct |
40158631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 36068213 - 36068118
Alignment:
| Q |
8 |
taggggtggacatcgggcggtctcggtcggatttcgggtgaaaacctccaatacaaaggtaaccgcgggtgggaatatagcacccatcttcgtccg |
103 |
Q |
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||||| ||||| ||||||||| ||||||||||||||| |||||| | ||||| | ||||||||||| |||| |||||| |||||| |||||||| |
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| T |
36068213 |
tagggctggacgtcgggcggtttcggtcggatttcggttgaaaaaccccaatccgaaggtaaccgctggtgacaatataccacccaatttcgtccg |
36068118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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