View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4817-Insertion-3 (Length: 588)

Name: NF4817-Insertion-3
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4817-Insertion-3
NF4817-Insertion-3
[»] chr5 (7 HSPs)
chr5 (7-588)||(14308117-14308697)
chr5 (158-322)||(23940368-23940534)
chr5 (218-322)||(24005176-24005282)
chr5 (220-305)||(32429665-32429750)
chr5 (395-462)||(25614282-25614349)
chr5 (155-281)||(31262134-31262260)
chr5 (418-456)||(24005041-24005079)
[»] scaffold1089 (1 HSPs)
scaffold1089 (176-562)||(595-981)
[»] chr3 (3 HSPs)
chr3 (220-588)||(2467474-2467842)
chr3 (227-307)||(43693760-43693840)
chr3 (226-307)||(43684712-43684793)
[»] chr6 (12 HSPs)
chr6 (418-510)||(7872237-7872329)
chr6 (417-510)||(7815400-7815493)
chr6 (245-537)||(14435594-14435886)
chr6 (175-303)||(14438489-14438617)
chr6 (415-510)||(7818328-7818423)
chr6 (418-538)||(3254884-3255004)
chr6 (435-493)||(7820006-7820064)
chr6 (435-504)||(7805793-7805862)
chr6 (233-293)||(7806063-7806123)
chr6 (426-510)||(7860924-7861008)
chr6 (229-305)||(7872040-7872116)
chr6 (229-293)||(10416229-10416293)
[»] scaffold1377 (1 HSPs)
scaffold1377 (418-538)||(1343-1463)
[»] chr1 (4 HSPs)
chr1 (415-538)||(37996590-37996713)
chr1 (229-300)||(28720317-28720388)
chr1 (417-537)||(28720055-28720175)
chr1 (333-373)||(37996758-37996798)
[»] chr4 (2 HSPs)
chr4 (415-510)||(14018652-14018747)
chr4 (229-306)||(14018453-14018530)
[»] chr7 (1 HSPs)
chr7 (395-460)||(19316676-19316741)


Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Original strand, 14308117 - 14308697
Alignment:
Q  7 aatgggatgacaacaatgtgttggaagagtttaaatccttgtcagttgtccttgtctaaattggttagagctgaaattgatccggttgatgttccgagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14308117 aatgggatgacaacaatgtgttggaagagtttaaatccttgtcagttgtccttgtctaaattggttagagctgaaattgatccggttgatgttccgagta 14308216  T
Q  107 atgtaattgataatgtcgagtttctatgcatgaaccacacagaaatggatactttcaaaagcatttcaatgtttccaaacttaattcacattaaactaca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14308217 atgtaattgataatgtcgagtttctatgcatgaaccacacagaaatggatactttcaaaagcatttcaatgtttcgaaacttaattcacattaaactaca 14308316  T
Q  207 ctttaattccatctttcgtggctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtggagtagta 306  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14308317 atttaattccatctttcgtggctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaatccttttcataaaaaaggtttgtggagtagta 14308416  T
Q  307 tttgtgtttgcttgttatttgcttcgtatattttaataaatggtattttttatttctttgatagtggttcttgagtttatcccgagattggaaatgtcca 406  Q
    ||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14308417 tttgtgtttgcttgttatttgcttcgtatattttagtaaatgcta-tttttatttctttgacagtggttcttgagtttatcccgagattggaaatgtcca 14308515  T
Q  407 agtttagctcttgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgc 506  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  14308516 agtttggctcttgaatgtgttttgtcacacctcagatcatgtactattttaaactttcaatgctatggaaatgatcttcgatttgcaacatatattttgc 14308615  T
Q  507 agaacacaagacgtttacaagacatgacaatcaacattactactcacccctcaaattggatgcttttgggaaagagacaaat 588  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  14308616 agaacgcaagacgtttgcaagacatgacaatcaacattactacttacccttcaaattggatgcttttgggaaagagacaaat 14308697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 158 - 322
Target Start/End: Complemental strand, 23940534 - 23940368
Alignment:
Q  158 ctttcaaaagcatttcaatgtttccaaacttaattcacattaaactacactttaattccatctttcgtggctgggatggtgtagtagaattgctccagaa 257  Q
    |||||||| ||||| |  |||||| |||||||||||| |||  ||||   ||||||  | |||||| ||||||||||||||| ||||| |||||| ||||    
T  23940534 ctttcaaaggcattcctgtgtttcaaaacttaattcatattggactatggtttaatcacttctttcatggctgggatggtgtggtagatttgctcaagaa 23940435  T
Q  258 ttgtcccaggcttgaaattcttttcataaaaaaggtttgt--ggagtagtatttgtgtttgcttgtt 322  Q
    |||||||| |||| |||||||||| || |  |||||||||   ||||||||| | ||||||||||||    
T  23940434 ttgtcccaagcttcaaattctttttattagtaaggtttgttgagagtagtatgtttgtttgcttgtt 23940368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 218 - 322
Target Start/End: Complemental strand, 24005282 - 24005176
Alignment:
Q  218 tctttcgtggctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgt--ggagtagtatttgtgttt 315  Q
    |||||| ||||||| |||||||||||||  |||||||||| ||||||| |||| |||||||||| || | ||||||||||   ||||||||| | |||||    
T  24005282 tctttcatggctggaatggtgtagtagatatgctccagaactgtcccaagcttcaaattctttttattagaaaggtttgttgagagtagtatgtttgttt 24005183  T
Q  316 gcttgtt 322  Q
    |||||||    
T  24005182 gcttgtt 24005176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 32429750 - 32429665
Alignment:
Q  220 tttcgtggctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtggagtagt 305  Q
    |||||||| ||||||||  |||||||||||||||   ||||||||| |||| ||||| ||||||||| ||||||||||| ||||||    
T  32429750 tttcgtggttgggatggcatagtagaattgctccgacattgtcccaagcttcaaatttttttcataagaaaggtttgtgaagtagt 32429665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 462
Target Start/End: Original strand, 25614282 - 25614349
Alignment:
Q  395 tggaaatgtccaagtttagctcttgaatgtgtttcgtcacacctcagatcatgtactattttaaactt 462  Q
    |||||||| |||| ||| |||||||||||| ||||||  |||||||| ||||||||||||||||||||    
T  25614282 tggaaatgcccaattttggctcttgaatgtatttcgtgtcacctcaggtcatgtactattttaaactt 25614349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 31262134 - 31262260
Alignment:
Q  155 atactttcaaaagcatttcaatgtttccaaacttaattcacattaaactacactttaattccatctttcgtggctgggatggtgtagtagaattgctcca 254  Q
    |||||||||||| |||| || |||||| ||| ||||||||||||||||||   ||  ||  | || ||| ||||||||||||||| ||||||||||||||    
T  31262134 atactttcaaaaccattccattgtttcaaaatttaattcacattaaactatggttgtatgacttcattcatggctgggatggtgtggtagaattgctcca 31262233  T
Q  255 gaattgtcccaggcttgaaattctttt 281  Q
    | |||| || | |||| || |||||||    
T  31262234 gcattgcccaaagcttcaagttctttt 31262260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 456
Target Start/End: Complemental strand, 24005079 - 24005041
Alignment:
Q  418 tgaatgtgtttcgtcacacctcagatcatgtactatttt 456  Q
    |||||||||||| || |||||||||||||||||||||||    
T  24005079 tgaatgtgtttcttctcacctcagatcatgtactatttt 24005041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 176 - 562
Target Start/End: Complemental strand, 981 - 595
Alignment:
Q  176 tgtttccaaacttaattcacattaaactacactttaattccatctttcgtggctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaat 275  Q
    |||||| |||||||||||||||||||||||| ||| ||| | |||||| ||||||||||||  ||||| ||||||||||  | ||||||| |||| ||||    
T  981 tgtttcgaaacttaattcacattaaactacagttttattgcttctttcatggctgggatggcatagtacaattgctccaacaatgtcccaagcttcaaat 882  T
Q  276 tcttttcataaaaaaggtttgtggagtagtatttgtgtttgcttgttatttgcttcgtatattttaataaatggtattttttatttctttgatagtggtt 375  Q
    | |||| || | |||||||||| ||||| ||| | |||||||||||| | |      |||||||| ||||||| |  |||| ||  |||||| |||||      
T  881 tgtttttattagaaaggtttgttgagtaatatatttgtttgcttgttctgtttcaaatatattttgataaatgttgcttttcatccctttgacagtggag 782  T
Q  376 cttgagtttatcccgagattggaaatgtccaagtttagctcttgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcgga 475  Q
     |  || | ||||   || |||||||| |||| ||  | |||||||||||||||||| ||||||||||||||||| |||||||||||| || | |  |      
T  781 gtccagctcatccaaggaatggaaatggccaaattcggttcttgaatgtgtttcgtctcacctcagatcatgtacaattttaaactttgaaggatcggct 682  T
Q  476 aatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaacattactactcacccctcaaat 562  Q
    ||| | |||| ||||||| |||||||| |||||||  | ||   ||||||||| ||||||||| || ||||||||| | ||||||||    
T  681 aataaccttctatttgcaacatatattctgcagaatgctaggtttttacaagatatgacaatcgacgttactactcgctcctcaaat 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 220 - 588
Target Start/End: Complemental strand, 2467842 - 2467474
Alignment:
Q  220 tttcgtggctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtggagtagtatttgtgtttgctt 319  Q
    |||| |||||||||| ||||||||||| |||||    | |||| || |||| ||||| |||| || | |||||||||| ||||| ||| | |||||||||    
T  2467842 tttcatggctgggattgtgtagtagaactgctctgccactgtcgcaagcttcaaattgtttttattagaaaggtttgttgagtaatatatttgtttgctt 2467743  T
Q  320 gttatttgcttcgtatattttaataaatggtattttttatttctttgatagtggttcttgagtttatcccgagattggaaatgtccaagtttagctcttg 419  Q
    ||| | |  | | |||||||| | ||||| || |||| ||| |||||| |||||  ||  || ||| ||  ||| ||||||||||||||||  | |||||    
T  2467742 gttctattttacatatattttgaaaaatgttacttttcattcctttgacagtggagctccagcttagccaaagaatggaaatgtccaagttcggttcttg 2467643  T
Q  420 aatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacg 519  Q
    |||| |||||||| ||||| | ||||||||| |||||||| ||| || | |  | ||||||||||||||||||| ||||||| ||||||||    |||      
T  2467642 aatgcgtttcgtctcaccttatatcatgtacaattttaaattttgaagggtctgcaaatgatcttcgatttgcaacatatatattgcagaatgggagaat 2467543  T
Q  520 tttacaagacatgacaatcaacattactactcacccctcaaattggatgcttttgggaaagagacaaat 588  Q
    ||||||| ||||||||||| || |||| |||  | |||||||| | | |||||||| |||||| |||||    
T  2467542 tttacaaaacatgacaatcgacgttacaactagctcctcaaatggaaagcttttggaaaagagtcaaat 2467474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 43693840 - 43693760
Alignment:
Q  227 gctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtggagtagtat 307  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||    
T  43693840 gctgggatggtatagtagaattgctccagaattgtcccaagcttcaaattcttttcataagaaaggtttgtggattagtat 43693760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 43684793 - 43684712
Alignment:
Q  226 ggctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtggagtagtat 307  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||| | ||||||||||||| ||||||    
T  43684793 ggctgggatggtgtagtagaattgcttctgaattgtcccaagcttgaaattcttatcatcagaaaggtttgtggattagtat 43684712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 510
Target Start/End: Original strand, 7872237 - 7872329
Alignment:
Q  418 tgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 510  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| ||  |||  | ||||||||||||||||||| ||||||||||||||||    
T  7872237 tgaatgtgtttcgtctcaccttagatcatgtactattttaaacttccatggctcagcaaatgatcttcgatttgcaacatatattttgcagaa 7872329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 417 - 510
Target Start/End: Original strand, 7815400 - 7815493
Alignment:
Q  417 ttgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 510  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| ||| |||  | |||||||||||||||| ||  |||||||||||||||    
T  7815400 ttgaatgtgtttcatctcacctcagatcatgtactattttaaacttacaaggctcggaaaatgatcttcgatttacaaaatatattttgcagaa 7815493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 245 - 537
Target Start/End: Complemental strand, 14435886 - 14435594
Alignment:
Q  245 aattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtggagtagtatttgtgtttgcttgttatttgcttcgtatattttaata 344  Q
    ||||||||||  ||||||||| |||| ||||||||||||| |||||||||||  ||||| ||| | |||||||||||| |    |   ||||||||||||    
T  14435886 aattgctccaacattgtcccatgcttcaaattcttttcattaaaaaggtttgctgagtaatatatttgtttgcttgttctgctttaaatatattttaata 14435787  T
Q  345 aatggtattttttatttctttgatagtggttcttgagtttatcccgagattggaaatgtccaagtttagctcttgaatgtgtttcgtcacacctcagatc 444  Q
    |||| |  |||| ||  |||||| |||||   |  || | ||||   || |||||||| |||| ||  | | |||||||||||||||| |||||||||||    
T  14435786 aatgttgcttttcatccctttgacagtggaggtacagctcatccaaggaatggaaatggccaaattcggttattgaatgtgtttcgtctcacctcagatc 14435687  T
Q  445 atgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaat 537  Q
    |||||| |||||||||||| || | |  | |||||| |||| |||||||  |||||| ||||||||  | || | ||||||||| ||||||||    
T  14435686 atgtacaattttaaactttgaaggatcggcaaatgaccttcaatttgcaaaatatatattgcagaatgcgaggcttttacaagatatgacaat 14435594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 14438617 - 14438489
Alignment:
Q  175 atgtttccaaacttaattcacattaaactacactttaattccatctttcgtggctgggatggtgtagtagaattgctccagaattgtcccaggcttgaaa 274  Q
    ||||||| |||||||||||||||||||||||| ||| |||   |||||| ||||||||||||  ||||| |||| |||||  ||||||||| |||| |||    
T  14438617 atgtttcaaaacttaattcacattaaactacagttttattggttctttcctggctgggatggcatagtacaatttctccaacattgtcccaagcttcaaa 14438518  T
Q  275 ttcttttcataaaaaaggtttgtggagta 303  Q
    ||||||  || || ||||||||| |||||    
T  14438517 ttctttatattaataaggtttgttgagta 14438489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 415 - 510
Target Start/End: Original strand, 7818328 - 7818423
Alignment:
Q  415 tcttgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 510  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||||||| |||    |||| ||||||||||| || ||||||||||| ||||    
T  7818328 tcttgaatgtgtttcgtctaacctcaaatcatgtactattttaaactttcaaggcttgataaattatcttcgatttacaacatatattttgaagaa 7818423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 538
Target Start/End: Complemental strand, 3255004 - 3254884
Alignment:
Q  418 tgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcgg-aaatgatcttcgatttgcagcatatattttgcagaacacaag 516  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||| ||  ||||  ||| ||||||||||| |||||||  |||||||||||||||  | ||    
T  3255004 tgaatgtgttttgtcacacctcacatcatgtaccattttaaacctt-gatgcctcggcaaatgatcttcaatttgcaaaatatattttgcagaatgcgag 3254906  T
Q  517 acgtttacaagacatgacaatc 538  Q
     | |||||||||||||| ||||    
T  3254905 tcttttacaagacatgagaatc 3254884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 7820064 - 7820006
Alignment:
Q  435 acctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgca 493  Q
    ||||||||||||||||||||||||||||| || |||  | |||||||||||||||||||    
T  7820064 acctcagatcatgtactattttaaactttgaaggctcggaaaatgatcttcgatttgca 7820006  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 504
Target Start/End: Complemental strand, 7805862 - 7805793
Alignment:
Q  435 acctcagatcatgtactattttaaactttcaatgctgcgga-aatgatcttcgatttgcagcatatatttt 504  Q
    ||||||||||||||||||||||||||||| |  ||| |||| ||||||||||||||||||  |||||||||    
T  7805862 acctcagatcatgtactattttaaactttgacggct-cggataatgatcttcgatttgcaaaatatatttt 7805793  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 7806123 - 7806063
Alignment:
Q  233 atggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggt 293  Q
    ||||||||||| || ||||||   ||||||||| |||| ||||||||||||| ||||||||    
T  7806123 atggtgtagtaaaactgctccgccattgtcccaagcttcaaattcttttcattaaaaaggt 7806063  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 510
Target Start/End: Original strand, 7860924 - 7861008
Alignment:
Q  426 tttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 510  Q
    ||||||| |||||||||||||||| | || ||||||||||| |||    ||||||||||  ||||| |  |||||||||||||||    
T  7860924 tttcgtctcacctcagatcatgtattgttctaaactttcaaggctcgacaaatgatcttaaatttgtaaaatatattttgcagaa 7861008  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 7872040 - 7872116
Alignment:
Q  229 tgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtggagtagt 305  Q
    ||||||||| ||| |||||||||||   ||||||||| |||| |||||||| | || |||||||| ||| |||||||    
T  7872040 tgggatggtataggagaattgctccgccattgtcccaagcttcaaattcttattattaaaaaggtatgttgagtagt 7872116  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 10416229 - 10416293
Alignment:
Q  229 tgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggt 293  Q
    |||||||||||||| |||  |||||   ||||||||| |||| ||||||||||||| ||||||||    
T  10416229 tgggatggtgtagttgaacggctcctccattgtcccaagcttcaaattcttttcattaaaaaggt 10416293  T

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Target: scaffold1377 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 538
Target Start/End: Complemental strand, 1463 - 1343
Alignment:
Q  418 tgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaaga 517  Q
    |||||||||||| || ||||||||||| ||||| |||||||||||| || |||  |  ||| |||||||||||||| ||||||||||||||||  | ||     
T  1463 tgaatgtgtttcctctcacctcagatcctgtacaattttaaactttgaaggctcggccaataatcttcgatttgcaacatatattttgcagaatgcgagg 1364  T
Q  518 cgtttacaagacatgacaatc 538  Q
    | ||||||||| |||||||||    
T  1363 cttttacaagatatgacaatc 1343  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 415 - 538
Target Start/End: Complemental strand, 37996713 - 37996590
Alignment:
Q  415 tcttgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacaca 514  Q
    |||||| ||| ||||||| ||||| |||||||||||||||||||||||| || |||  |   |||||||||||||||||  |||||||||||| ||  ||    
T  37996713 tcttgagtgtatttcgtctcacctaagatcatgtactattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgca 37996614  T
Q  515 agacgtttacaagacatgacaatc 538  Q
    || | |||||||||||||| ||||    
T  37996613 agtcttttacaagacatgagaatc 37996590  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 28720388 - 28720317
Alignment:
Q  229 tgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtgga 300  Q
    ||||||||||||||||||||| | ||||||||||||| |||| ||||| ||||||| | |||||||||||||    
T  28720388 tgggatggtgtagtagaattgtttcagaattgtcccaagcttcaaattgttttcattagaaaggtttgtgga 28720317  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 417 - 537
Target Start/End: Complemental strand, 28720175 - 28720055
Alignment:
Q  417 ttgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaag 516  Q
    |||||||||||  ||| |||||||| ||||||||||||||||| ||| || |||  | ||||||||| |||||||||   |||||| |||||||  | ||    
T  28720175 ttgaatgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgag 28720076  T
Q  517 acgtttacaagacatgacaat 537  Q
    || ||||||||| ||||||||    
T  28720075 acttttacaagaaatgacaat 28720055  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 37996798 - 37996758
Alignment:
Q  333 tatattttaataaatggtattttttatttctttgatagtgg 373  Q
    |||||||||||||||| ||||||||||| |||||| |||||    
T  37996798 tatattttaataaatgttattttttattcctttgacagtgg 37996758  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 415 - 510
Target Start/End: Original strand, 14018652 - 14018747
Alignment:
Q  415 tcttgaatgtgtttcgtcacacctcagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 510  Q
    |||||||||||||||||| || || |||||||||||||||||||||||| |   ||  | |||||||||||||||||||  ||| |||||||||||    
T  14018652 tcttgaatgtgtttcgtctcatcttagatcatgtactattttaaactttgataactcggcaaatgatcttcgatttgcaaaatacattttgcagaa 14018747  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 14018453 - 14018530
Alignment:
Q  229 tgggatggtgtagtagaattgctccagaattgtcccaggcttgaaattcttttcataaaaaaggtttgtggagtagta 306  Q
    ||||||||||| |||||| ||||||   ||| ||| |||||  |||||||||| || |||||||||||| ||||||||    
T  14018453 tgggatggtgttgtagaactgctccgccattctccaaggctccaaattctttttattaaaaaggtttgttgagtagta 14018530  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 19316741 - 19316676
Alignment:
Q  395 tggaaatgtccaagtttagctcttgaatgtgtttcgtcacacctcagatcatgtactattttaaac 460  Q
    |||||||| |||| || || ||||||||||||||| || ||||| ||||||||||| | |||||||    
T  19316741 tggaaatgcccaatttcagttcttgaatgtgtttcatctcaccttagatcatgtacaactttaaac 19316676  T

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