View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817-Insertion-5 (Length: 385)
Name: NF4817-Insertion-5
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817-Insertion-5 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 196 - 385
Target Start/End: Complemental strand, 34860584 - 34860395
Alignment:
| Q |
196 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
295 |
Q |
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| T |
34860584 |
aattgatctccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
34860485 |
T |
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| Q |
296 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcgcctattctaaaaatattagctggcttgccctgagatgatgga |
385 |
Q |
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| T |
34860484 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacatgatgga |
34860395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 34860764 - 34860600
Alignment:
| Q |
8 |
ctttagttatgttgaaattcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgatattatttttgt |
107 |
Q |
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| T |
34860764 |
ctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgt |
34860665 |
T |
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| Q |
108 |
ttgaaagtggattatagatttagggtgcagggaaatacatgatgaagcttatatgtgtaagttga |
172 |
Q |
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| T |
34860664 |
ttgaaagtggattatagatttagcctgcagggaaatacatgatgaagcttatatgtgtaagttga |
34860600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 34860878 - 34860804
Alignment:
| Q |
19 |
ttgaaattcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaat |
93 |
Q |
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| T |
34860878 |
ttgaagttgatatacgacatatgaacctatatattagcttatgaaaattgttgctcacttgtttgactaaaaaat |
34860804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 19745765 - 19745640
Alignment:
| Q |
9 |
tttagttatgttgaaattcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgatattatttttg-t |
107 |
Q |
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| T |
19745765 |
tttagttatgttgaagtttatatatgatatattaacttatatatcgtcttatgcaaatggttgtttacttgtttgattcataaatgataatgttgtagtt |
19745666 |
T |
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| Q |
108 |
ttgaaagtggattatagatttagggt |
133 |
Q |
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| T |
19745665 |
ttaaaagaggatgatagatttagggt |
19745640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 282
Target Start/End: Original strand, 2242506 - 2242594
Alignment:
| Q |
196 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
282 |
Q |
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| T |
2242506 |
aattgatctccttactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 5757427 - 5757387
Alignment:
| Q |
202 |
tctccctacttaaatacaacaaatct-ttttaccacttctc |
241 |
Q |
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| T |
5757427 |
tctccctactcaaatacaacaaatcttttttaccacttctc |
5757387 |
T |
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