View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817-Insertion-6 (Length: 235)
Name: NF4817-Insertion-6
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817-Insertion-6 |
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| [»] scaffold1371 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold1371 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold1371
Description:
Target: scaffold1371; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 1586 - 1813
Alignment:
| Q |
8 |
gtcatgtcaaacacacagttttgcagatattctcttactttttcattaagccacggccaatccctgtatatgcccctcgttttttcctgaaaaagcctgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1586 |
gtcatgtcaaacacacagttttgcagatattctcttactttttcattaagccacggccaatccctgtatatgcccctcgttttttcctgaaaaagcctgc |
1685 |
T |
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| Q |
108 |
acagtcagattttttgaattttaagtttggcgcttaaattaaagacaggggctgtgtctttttgcaagggacaacccctgtgttatggtaagtggtcccc |
207 |
Q |
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| T |
1686 |
acaatcagattttttgaattttaagtttggcgcttaaattaaagacaggggctgtgtctttttgcgagggacaacccctgtgttatggtaagtggtcccc |
1785 |
T |
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| Q |
208 |
gcatttcttaaaatccgtttgtgaggaa |
235 |
Q |
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| T |
1786 |
gcatttctgaaaatccgtttgtgaggaa |
1813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 9670729 - 9670502
Alignment:
| Q |
8 |
gtcatgtcaaacacacagttttgcagatattctcttactttttcattaagccacggccaatccctgtatatgcccctcgttttttcctgaaaaagcctgc |
107 |
Q |
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| T |
9670729 |
gtcatgtcaaacacacagttttgcagatattctcttactttttcattaagccacggccaatccctgtatatgcccctcgttttttcctgaaaaagcctgc |
9670630 |
T |
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| Q |
108 |
acagtcagattttttgaattttaagtttggcgcttaaattaaagacaggggctgtgtctttttgcaagggacaacccctgtgttatggtaagtggtcccc |
207 |
Q |
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| T |
9670629 |
acaatcagattttttgaattttaagtttggcgcttaaattaaagacaggggctgtgtctttttgcgagggacaacccctgtgttatggtaagtggtcccc |
9670530 |
T |
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| Q |
208 |
gcatttcttaaaatccgtttgtgaggaa |
235 |
Q |
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| T |
9670529 |
gcatttctgaaaatccgtttgtgaggaa |
9670502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 5167457 - 5167577
Alignment:
| Q |
114 |
agattttttgaattttaagtttggcgcttaaattaaagacaggggctgtgtctttttgcaagggac-aacccctgtgttatggtaagtggtccccgcatt |
212 |
Q |
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| T |
5167457 |
agattttttgaatttcaagtttggcgctcaaattaaagacaggggttgtgtctttttgcccggggcaaacccctgtcttatggtaagtggtcctcgcatt |
5167556 |
T |
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| Q |
213 |
tcttaaaatccgtttgtgagg |
233 |
Q |
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| T |
5167557 |
tcttaaagtccatttgtgagg |
5167577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 46830340 - 46830251
Alignment:
| Q |
119 |
ttttgaattttaagtttggcgcttaaattaaagacaggggctgtgtctttttgcaagggac-aacccctgtgttatggtaagtggtcccc |
207 |
Q |
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| T |
46830340 |
ttttgaattttatctttggcgcctaatttaaagacaggggttgtgtctatttgtgagggacaaacccctttgttatggtaagtggtcccc |
46830251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 6579706 - 6579634
Alignment:
| Q |
148 |
aaagacaggggctgtgtctttttgcaagggacaa-cccctgtgttatggtaagtggtccccgcatttcttaaa |
219 |
Q |
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| T |
6579706 |
aaagacacgggttgtgactttttgcgaggggcaagcccctgtcttattgtaagtggtccccatatttcttaaa |
6579634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 44462951 - 44462827
Alignment:
| Q |
85 |
cgttttttcctgaaaaagcctgcac-agtcagattttttgaattttaagtttggcgcttaaattaaagacaggggctgtgtctttttgcaagggacaa-c |
182 |
Q |
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|||||||| ||| |||||||||||| |||||| || ||||||||| | ||||||||| |||||||| |||||| |||||| |||| |||| ||| | |
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| T |
44462951 |
cgttttttgctgcaaaagcctgcactagtcagcttctttgaatttcatttttggcgctcaaattaaactcaggggttgtgtccatttgtgaggggcaaac |
44462852 |
T |
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| Q |
183 |
ccctgtgttatggtaagtggtcccc |
207 |
Q |
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| T |
44462851 |
ccctgtcttatggtaagtggtcccc |
44462827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 44470482 - 44470358
Alignment:
| Q |
85 |
cgttttttcctgaaaaagcctgcac-agtcagattttttgaattttaagtttggcgcttaaattaaagacaggggctgtgtctttttgcaagggacaa-c |
182 |
Q |
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|||||||| ||| |||||||||||| |||||| || ||||||||| | ||||||||| |||||||| |||||| |||||| |||| |||| ||| | |
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| T |
44470482 |
cgttttttgctgcaaaagcctgcactagtcagcttctttgaatttcatttttggcgctcaaattaaactcaggggttgtgtccatttgtgaggggcaaac |
44470383 |
T |
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| Q |
183 |
ccctgtgttatggtaagtggtcccc |
207 |
Q |
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|||||| |||||||||||||||||| |
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| T |
44470382 |
ccctgtcttatggtaagtggtcccc |
44470358 |
T |
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