View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4817_high_10 (Length: 344)

Name: NF4817_high_10
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4817_high_10
NF4817_high_10
[»] chr6 (2 HSPs)
chr6 (139-328)||(13604422-13604611)
chr6 (14-70)||(13604680-13604736)
[»] chr4 (2 HSPs)
chr4 (164-253)||(24269834-24269923)
chr4 (16-70)||(24269704-24269758)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 139 - 328
Target Start/End: Complemental strand, 13604611 - 13604422
Alignment:
Q  139 ccactaatcgatcattnnnnnnncatgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaggttccacttcatactggtgcaccatg 238  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13604611 ccactaatcgatcattaaaaaaacatgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaagttccacttcatactggtgcaccatg 13604512  T
Q  239 ttcttctcacaaaaccaacaaatatctccaatcaaaaagggaaacgataaaaaagactcacccaatatttgcattgttgaacacgttctc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13604511 ttcttctcacaaaaccaacaaatatctccaatcaaaaagggaaacgataaaaaagactcacccaatatttgcattgttgaacacgttctc 13604422  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 13604736 - 13604680
Alignment:
Q  14 aatataccttagccaccacagtcacctatacacaattcgacttaagtcaaacctcaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13604736 aatataccttagccaccacagtcacctatacacaattcgacttaagtcaaacctcaa 13604680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 24269834 - 24269923
Alignment:
Q  164 tgtttctatctagaagcagtatcaagtatgtccaaaacctcagcatcaggttccacttcatactggtgcaccatgttcttctcacaaaac 253  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  24269834 tgtttctgtctagaagcagtatcaagtatgtccaaaacctcagcatcagggtccacttcatactggtgcaccacgttcttctcacgaaac 24269923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 24269704 - 24269758
Alignment:
Q  16 tataccttagccaccacagtcacctatacacaattcgacttaagtcaaacctcaa 70  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  24269704 tataccttccccaccacagtcacctatacacaattcaacttaagtcaaacctcaa 24269758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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