View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817_high_11 (Length: 336)
Name: NF4817_high_11
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 16961724 - 16961393
Alignment:
| Q |
4 |
agcagcaccacagatttctgcaacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgttggaaacaaca |
103 |
Q |
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| T |
16961724 |
agcagcaccacagatttctgcaacattgaacctactccatatttaacactagtgtgctatgaagaaaatgttacacagttgcatgttgttggaaacacca |
16961625 |
T |
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| Q |
104 |
atgagtttacttcattgcctcaaaatttcaactcatacacactcttttcaacactttccactttatcaagcttgaaagtactctctttggtttctcttgg |
203 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16961624 |
atgagttcacctcattgcctcaaaatttcaactcatacacactcttttcaacactttccactttatcaagcttgaaagtactctctttggtttcacttgg |
16961525 |
T |
|
| Q |
204 |
tttatgggggccactacctgaaacaatagctcaattatcttcactagaaatacttaacattagctcaaattactttagtggagaaataccatctcagctt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16961524 |
tttatgggggccactacctgaaacaatagctcaattatcttcactagaaatacttaacattagctcaaattactttagtggagaaataccatctcaactt |
16961425 |
T |
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| Q |
304 |
tcacatcttaacaatcttcaatcactagtact |
335 |
Q |
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|||||||||||||||||||||||| ||||||| |
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| T |
16961424 |
tcacatcttaacaatcttcaatcattagtact |
16961393 |
T |
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