View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4817_high_12 (Length: 332)
Name: NF4817_high_12
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817_high_12 |
 | |
|
| [»] scaffold0247 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 15080168 - 15080492
Alignment:
| Q |
1 |
acataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15080168 |
acataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacct |
15080267 |
T |
|
| Q |
101 |
tgaacaaacagtgacacgcaacaatccagaacac----gctaggagagaattgaatatcacgatataataaacaacgatacaaacaaaaaccaagaacac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15080268 |
tgaacaaacagtgacacgcaacaatccagaacacactagctaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaagaacac |
15080367 |
T |
|
| Q |
197 |
aaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagatc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15080368 |
aaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcagcaattcatcaattcaacatttaaacgtaagctagatc |
15080467 |
T |
|
| Q |
297 |
aaaaagaaaagcgattacgagaataa |
322 |
Q |
| |
|
||||||||||| |||| ||||||||| |
|
|
| T |
15080468 |
aaaaagaaaagtgatt-cgagaataa |
15080492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 13515651 - 13515975
Alignment:
| Q |
1 |
acataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13515651 |
acataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacct |
13515750 |
T |
|
| Q |
101 |
tgaacaaacagtgacacgcaacaatccagaacac----gctaggagagaattgaatatcacgatataataaacaacgatacaaacaaaaaccaagaacac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13515751 |
tgaacaaacagtgacacgcaacaatccagaacacactagctaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaagaacac |
13515850 |
T |
|
| Q |
197 |
aaataatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagatc |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
13515851 |
aaataatcacatacccaaatttgcacataaattaagggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaatgtaagctagatc |
13515950 |
T |
|
| Q |
297 |
aaaaagaaaagcgattacgagaataa |
322 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
13515951 |
-aaaagaaaagtgattacgagaataa |
13515975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 15684972 - 15684673
Alignment:
| Q |
1 |
acataatcccaatttcatatctcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15684972 |
acataatcccaatttcatatatcaaagtcttcgttaatctaactagtgaatatggctaaacggcaatcaaagacaacatccatcgttcacatagcaacct |
15684873 |
T |
|
| Q |
101 |
tgaacaaacagtgacacgcaacaatccagaacacgctaggagagaattgaatatcacgatataataaacaacgatacaaacaaaaacc-aagaacacaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
15684872 |
tgaacaaacagtgacacgcaacaatccagaacacactaggagagaattgaatatcacgacataataaacaacaatacaaacaaaaaccaaagaacacaaa |
15684773 |
T |
|
| Q |
200 |
taatcacatacccaaatttgcacataaattaacggcataaaattcaccaaacaaaatcatcaattcatcaattcaacatttaaacgtaagccagatcaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
15684772 |
taatcacatacccaaatttgcacataaattaagggcataaaattcaccaaacaaaatcatcaattcaaca-------atttaaacgtaagctagatcaaa |
15684680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 32655676 - 32655755
Alignment:
| Q |
86 |
ttcacatagcaaccttgaacaaacagtgacacgcaacaatccagaacacgctaggagagaattgaatatcacgatataat |
165 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||| | || ||||||||| |||| |||||||||| |
|
|
| T |
32655676 |
ttcacatagcaaccttgaacaaacagtgttgcacaacaatccagaacacaccagtagagaattgtatataacgatataat |
32655755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 277
Target Start/End: Complemental strand, 1395 - 1360
Alignment:
| Q |
242 |
ttcaccaaacaaaatcatcaattcatcaattcaaca |
277 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1395 |
ttcacaaaacaaaatcatcaattcatcaattcaaca |
1360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University