View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817_high_15 (Length: 309)
Name: NF4817_high_15
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7413615 - 7413385
Alignment:
| Q |
1 |
aaaatcatgtttgttaggttaagatagcataatatttatgtcatttgaatatcaatttatacagagagaaaaagaacagctccatgttgaatttattaag |
100 |
Q |
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| T |
7413615 |
aaaatcatgtttgttaggttaagatagcatagtatttatgtcatttgaatatcaatttatacagagagaaaaagaacagctccatgttgaattcattaag |
7413516 |
T |
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| Q |
101 |
cttgtaagacaactgatatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataacacaaaaggacaacaaagagt |
200 |
Q |
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| T |
7413515 |
cttgtaagacaactgatatgaaacaaaagttggaatgggagattaggcaactaaaaggattactaactgcgttgaataacacaaagggacaacaaagagt |
7413416 |
T |
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| Q |
201 |
tagaagatgatgatgttttgaataaaataaa |
231 |
Q |
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| T |
7413415 |
tagaagatgatgatgttttggataaaataaa |
7413385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 7413075 - 7413379
Alignment:
| Q |
1 |
aaaatcatgtttgttaggttaagat-agcataatatttatgtcatttgaatatcaatttatacagagaga---aaaagaacagctccatgttgaatttat |
96 |
Q |
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| T |
7413075 |
aaaattatgtttgttaggttaaaattagcatagtatttatgccatttgaatatcaatttatacaaagagagaaaaaagaatagctccatgttgaattcgt |
7413174 |
T |
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| Q |
97 |
taagcttgtaagacaactg-atatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataacacaaaaggacaacaa |
195 |
Q |
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| T |
7413175 |
taagcttgtaagacaactggatatgaaacaaaagtttgaatgagtgattgggcaactaaaaggatcactaactgcgttgaataacac-aagggacaagaa |
7413273 |
T |
|
| Q |
196 |
agagttagaagatgatgatg-ttttgaataaaataaagtacttgcagatggaattgaaggaaaagcaagagttccttcaagcatgcgaagagttgaacca |
294 |
Q |
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| T |
7413274 |
agatttagaagatgatgaagtttttggataaaataaattctttgcagatggaattgaaagaaaaggaagagttacttcaagcctgcgagggcctgaacca |
7413373 |
T |
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| Q |
295 |
aatgat |
300 |
Q |
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|||||| |
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| T |
7413374 |
aatgat |
7413379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 30495558 - 30495734
Alignment:
| Q |
8 |
tgtttgttaggttaa-gatagcataatatttatgtcatttgaatatcaatttata--cagagagaaaaa-gaacagctccatgttgaatttattaagctt |
103 |
Q |
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| T |
30495558 |
tgtttgttaggtcaacgttagcatagtatttatgtcattcaaatatcaatttatatacagggagaaaaaagaacaacttcatgttgaattcgttaagctt |
30495657 |
T |
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| Q |
104 |
gtaagacaactg-atatgaaacaaaagttggaatgagagattaggcaactaaaaggattactaactgcgttgaataa |
179 |
Q |
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| T |
30495658 |
gtaagacaactggatatgaaacaaaagttggaatgggagattgggcaactaaaaggatcactaattgtgttgaataa |
30495734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 30446936 - 30447068
Alignment:
| Q |
45 |
ttgaatatcaatttatacagagagaaaaagaacagctccatgttgaatttattaagcttgtaagacaact-gatatgaaacaaaagttggaatgagagat |
143 |
Q |
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|||||| || ||||||||||| | |||||||||||||||||| | || | ||| |||||| ||||||||| ||||||||||||||| ||||| ||||| |
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| T |
30446936 |
ttgaatttctatttatacagaaacaaaaagaacagctccatgctaaaatcattcagcttgaaagacaactggatatgaaacaaaagctggaactggagat |
30447035 |
T |
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| Q |
144 |
taggcaactaaaaggattactaactgcgttgaa |
176 |
Q |
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| T |
30447036 |
tcagcaactaaaaggatcactaagtgtgttgaa |
30447068 |
T |
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