View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4817_high_19 (Length: 308)
Name: NF4817_high_19
Description: NF4817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4817_high_19 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 34861040 - 34860760
Alignment:
| Q |
12 |
agttgatggatgggggatgatttgttatctgaaaatgggggtagactaagtgacactgctcttgatattgatggataggatgatttgtaccagattatga |
111 |
Q |
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| T |
34861040 |
agttgatggatgggggatgatttgttatctgaaaatgg----------------actgctcttgatattgatggataggatgatttgtaccagattatga |
34860957 |
T |
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| Q |
112 |
ttatgtactagtatcatcaaaccataggaaagaagtaggaatttgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatat |
211 |
Q |
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| T |
34860956 |
ttatgtactagtatcatcaaagcataggaaagaagtaggaattcgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatat |
34860857 |
T |
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| Q |
212 |
gaacctatatattagcatatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatcttta |
308 |
Q |
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| T |
34860856 |
gaacctatatattagcttatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatcttta |
34860760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 34860770 - 34860663
Alignment:
| Q |
173 |
ttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcatatgaaaattgttgctcacttgtttgactaaaaaattctaataa |
272 |
Q |
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| T |
34860770 |
ttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatat |
34860671 |
T |
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| Q |
273 |
ttttgttt |
280 |
Q |
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| T |
34860670 |
ttttgttt |
34860663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 36341389 - 36341437
Alignment:
| Q |
205 |
gacatatgaacctatatattagcatatgaaaattgttgctcacttgttt |
253 |
Q |
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| T |
36341389 |
gacatatgaacttatgtattagcttatgtaaattgttgttcacttgttt |
36341437 |
T |
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